Knowledge Graphs Constructions and Visualizations

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Documentation for package ‘kgraph’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

%$%	Exposition pipe
%<>%	Assignment pipe
%>%	Pipe
build_kgraph	Build a knowledge graph
build_kgraph_from_fit	Build a knowledge graph from a fit object
cov_simi	Covariance similarity
df_cuis_pairs	A dataset containing CUIs pairs
df_embeds_dict	A dictionary for the m_embeds object
df_phecode_pairs	A dataset containing Phecode pairs
df_pval	A dataset containing GWAS p-values
df_pval_dict	A dictionary for the df_pval object
fit_embeds_kg	Fit embeddings to a kgraph object
fit_embeds_to_pairs	Fit embeds to pairs
gen_df_notpairs	Generate null pairs
get_cutoff_threshold	Get cut-off threshold
get_sgraph	Wrapper to build a sgraph object fromk a kgraph object
m_embeds	A dataset containing medical word embeddings
project_pairs	Predict known pairs
reshape_multiple_traits	Reshape multiple traits in example data
reshape_multiple_traits_dict	Reshape multiple traits in example data dictionary
sparse_encode	sparse_encode