Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes

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Documentation for package ‘liayson’ version 1.0.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aggregateSegmentExpression	Aggregating genes across copy number segments.
assignCellsToClusters	Assigns cells to previously defined clones.
clusterCells	Grouping cells into clones.
cnps	Segment-by-cell matrix of copy number states from NCI-N87 cell line.
epg	Gene-by-cell matrix of expression from NCI-N87 cell line.
eps	Segment-by-cell matrix of expression from NCI-N87 cell line.
getNumRes	Clone size resolution.
runLIAYSON	Main Function.
saveClusteredCells	Saving clones to user-defined output.
segmentExpression2CopyNumber	Calling CNVs.
segments	Bulk copy number profile of NCI-N87 cell line.