Resolution-Optimised SNPs Searcher
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Documentation for package ‘minSNPs’ version 0.0.4
Help Pages
| calculate_percent | 'calculate_percent' |
| calculate_simpson | 'calculate_simpson' |
| cal_fn | 'cal_fn' |
| cal_fp | 'cal_fp' |
| check_fasta_meta_mapping | 'check_fasta_meta_mapping' |
| check_percent | 'check_percent' |
| extend_length | 'extend_length' |
| find_optimised_snps | 'find_optimised_snps' |
| full_merge | 'full_merge' |
| full_merge_1 | 'full_merge_1' |
| generate_kmers | 'generate_kmers' |
| generate_kmer_search_string | 'generate_kmer_search_string' |
| generate_pattern | 'generate_pattern' |
| generate_snp_search_string | 'generate_snp_search_string' |
| get_metric_fun | 'get_metric_fun' |
| identify_overlaps | 'identify_overlaps' |
| iterate_merge | 'iterate_merge' |
| match_count | 'match_count' |
| merge_fasta | 'merge_fasta' |
| output_result | 'output_result' |
| output_to_files | 'output_to_files' |
| process_allele | 'process_allele' |
| read_fasta | 'read_fasta' |
| read_sequences_from_fastq | 'read_sequences_from_fastq' |
| resolve_IUPAC_missing | 'resolve_IUPAC_missing' |
| reverse_complement | 'reverse_complement' |
| view_percent | 'view_percent' |
| view_simpson | 'view_simpson' |
| write_fasta | 'write_fasta' |