Resolution-Optimised SNPs Searcher
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Documentation for package ‘minSNPs’ version 0.1.0
Help Pages
| calculate_percent | 'calculate_percent' |
| calculate_simpson | 'calculate_simpson' |
| calculate_variant_within_group | 'identify_group_variant_breakdown' |
| cal_fn | 'cal_fn' |
| cal_fp | 'cal_fp' |
| cal_met_snp | 'cal_met_snp' |
| check_fasta_meta_mapping | 'check_fasta_meta_mapping' |
| check_multistate | 'check_multistate' |
| check_percent | 'check_percent' |
| combine_fastq_search_result | 'combine_fastq_search_result' |
| combine_search_string_result | 'combine_search_string_result' |
| combine_search_string_result_from_files | 'combine_search_string_result_from_files' |
| combine_search_string_result_from_list | 'combine_search_string_result_from_list' |
| estimate_coverage | 'estimate_coverage' |
| extend_length | 'extend_length' |
| find_optimised_snps | 'find_optimised_snps' |
| full_merge | 'full_merge' |
| full_merge_1 | 'full_merge_1' |
| generate_kmers | 'generate_kmers' |
| generate_kmer_search_string | 'generate_kmer_search_string' |
| generate_pattern | 'generate_pattern' |
| generate_snp_search_string | 'generate_snp_search_string' |
| get_all_process_methods | 'get_all_process_methods' |
| get_metric_fun | 'get_metric_fun' |
| get_snps_set | 'get_snps_set' |
| identify_overlaps | 'identify_overlaps' |
| infer_from_combined | 'infer_from_combined' |
| iterate_merge | 'iterate_merge' |
| iterate_through | 'iterate_through' |
| match_count | 'match_count' |
| merge_fasta | 'merge_fasta' |
| output_result | 'output_result' |
| output_to_files | 'output_to_files' |
| process_allele | 'process_allele' |
| process_kmer_result | 'process_kmer_result' |
| process_result_file | 'process_result_file' |
| process_snp_result | 'process_snp_result' |
| read_fasta | 'read_fasta' |
| read_sequences_from_fastq | 'read_sequences_from_fastq' |
| remove_snp_conflict | 'remove_snp_conflic' |
| resolve_IUPAC_missing | 'resolve_IUPAC_missing' |
| reverse_complement | 'reverse_complement' |
| search_from_fastq_reads | 'search_from_fastq_reads' |
| sequence_reads_match_count | 'sequence_reads_match_count' |
| view_percent | 'view_percent' |
| view_simpson | 'view_simpson' |
| write_fasta | 'write_fasta' |