Microclimatic Data Processing

---

Documentation for package ‘myClim’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

mc_agg	Aggregate data by function
mc_calc_cumsum	Cumulative sum
mc_calc_fdd	Freezing Degree Days
mc_calc_gdd	Growing Degree Days
mc_calc_snow	Snow detection from temperature
mc_calc_snow_agg	Summary of TRUE/FALSE snow sensor
mc_calc_tomst_dendro	Calibrating Tomst dendrometer values to micrometers
mc_calc_vpd	Calculate vapor pressure deficit (in kPa)
mc_calc_vwc	Calibrating TMS soil moisture from raw TMS to VWC
mc_calib_moisture	Calculates coefficients for TMS moisture conversion to VWC
mc_DataFormat	Class for logger file data format
mc_DataFormat-class	Class for logger file data format
mc_data_example_agg	Example data in Agg-format.
mc_data_example_clean	Example cleaned data in Raw-format.
mc_data_example_raw	Example data in Raw-format
mc_data_formats	Formats of source data files
mc_data_heights	Default heights of sensors
mc_data_physical	Physical quantities definition
mc_data_sensors	Sensors definition.
mc_data_vwc_parameters	Volumetric water content parameters
mc_env_moist	Standardised myClim soil moisture variables
mc_env_temp	Standardised myClim temperature variables
mc_env_vpd	Standardised myClim vapor pressure deficit variables
mc_filter	Filter data from myClim object
mc_HOBODataFormat	Class for reading HOBO logger files
mc_HOBODataFormat-class	Class for reading HOBO logger files
mc_info	Get sensors info table
mc_info_clean	Call cleaning log
mc_info_count	Count data
mc_info_meta	Get localities metadata table
mc_join	Joining time-series from repeated downloads
mc_load	Load myClim object
mc_LocalityMetadata	Class for locality metadata
mc_LocalityMetadata-class	Class for locality metadata
mc_LoggerCleanInfo	Class for logger clean info
mc_LoggerCleanInfo-class	Class for logger clean info
mc_LoggerMetadata	Class for logger metadata
mc_LoggerMetadata-class	Class for logger metadata
mc_MainMetadata	Class for myClim object metadata
mc_MainMetadata-class	Class for myClim object metadata
mc_MainMetadataAgg	Class for myClim object metadata in Agg-format
mc_MainMetadataAgg-class	Class for myClim object metadata in Agg-format
mc_Physical	Class for physical
mc_Physical-class	Class for physical
mc_plot_image	Plot data - image
mc_plot_line	Plot data - ggplot2 geom_line
mc_plot_loggers	Plot data from loggers
mc_plot_raster	Plot data - ggplot2 geom_raster
mc_prep_calib	Sensors calibration
mc_prep_calib_load	Load calibration to correct microclimatic records
mc_prep_clean	Cleaning datetime series
mc_prep_crop	Crop datetime
mc_prep_fillNA	Fill NA
mc_prep_merge	Merge myClim objects
mc_prep_meta_locality	Set metadata of localities
mc_prep_meta_sensor	Set metadata of sensors
mc_prep_solar_tz	Set solar time offset against UTC time
mc_read_data	Reading files with locality metadata
mc_read_files	Reading files or directories
mc_read_long	Reading data from long data.frame
mc_read_tubedb	Reading data from TubeDB
mc_read_wide	Reading data from wide data.frame
mc_reshape_long	Export values to long table
mc_reshape_wide	Export values to wide table
mc_save	Save myClim object
mc_Sensor	Class for sensor definition
mc_Sensor-class	Class for sensor definition
mc_SensorMetadata	Class for sensor metadata
mc_SensorMetadata-class	Class for sensor metadata
mc_TOMSTDataFormat	Class for reading Tomst logger files
mc_TOMSTDataFormat-class	Class for reading Tomst logger files
mc_TOMSTJoinDataFormat	Class for reading TMS join files
mc_TOMSTJoinDataFormat-class	Class for reading TMS join files
myClimList	Custom list for myClim object