Microclimatic Data Processing


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Documentation for package ‘myClim’ version 1.0.1

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mc_agg Aggregate data by function
mc_calc_cumsum Cumulative sum
mc_calc_fdd Freezing Degree Days
mc_calc_gdd Growing Degree Days
mc_calc_snow Snow detection from temperature
mc_calc_snow_agg Summary of TRUE/FALSE snow sensor
mc_calc_tomst_dendro Calibrating Tomst dendrometer values to micrometers
mc_calc_vpd Calculate vapor pressure deficit (in kPa)
mc_calc_vwc Calibrating TMS soil moisture from raw TMS to VWC
mc_calib_moisture Calculates coefficients for TMS moisture conversion to VWC
mc_DataFormat Class for logger file data format
mc_DataFormat-class Class for logger file data format
mc_data_example_agg Example data in Agg-format.
mc_data_example_clean Example cleaned data in Raw-format.
mc_data_example_raw Example data in Raw-format
mc_data_formats Formats of source data files
mc_data_heights Default heights of sensors
mc_data_physical Physical quantities definition
mc_data_sensors Sensors definition.
mc_data_vwc_parameters Volumetric water content parameters
mc_env_moist Standardised myClim soil moisture variables
mc_env_temp Standardised myClim temperature variables
mc_env_vpd Standardised myClim vapor pressure deficit variables
mc_filter Filter data from myClim object
mc_HOBODataFormat Class for reading HOBO logger files
mc_HOBODataFormat-class Class for reading HOBO logger files
mc_info Get sensors info table
mc_info_clean Call cleaning log
mc_info_count Count data
mc_info_meta Get localities metadata table
mc_join Joining time-series from repeated downloads
mc_load Load myClim object
mc_LocalityMetadata Class for locality metadata
mc_LocalityMetadata-class Class for locality metadata
mc_LoggerCleanInfo Class for logger clean info
mc_LoggerCleanInfo-class Class for logger clean info
mc_LoggerMetadata Class for logger metadata
mc_LoggerMetadata-class Class for logger metadata
mc_MainMetadata Class for myClim object metadata
mc_MainMetadata-class Class for myClim object metadata
mc_MainMetadataAgg Class for myClim object metadata in Agg-format
mc_MainMetadataAgg-class Class for myClim object metadata in Agg-format
mc_Physical Class for physical
mc_Physical-class Class for physical
mc_plot_image Plot data - image
mc_plot_line Plot data - ggplot2 geom_line
mc_plot_loggers Plot data from loggers
mc_plot_raster Plot data - ggplot2 geom_raster
mc_prep_calib Sensors calibration
mc_prep_calib_load Load calibration to correct microclimatic records
mc_prep_clean Cleaning datetime series
mc_prep_crop Crop datetime
mc_prep_fillNA Fill NA
mc_prep_merge Merge myClim objects
mc_prep_meta_locality Set metadata of localities
mc_prep_meta_sensor Set metadata of sensors
mc_prep_solar_tz Set solar time offset against UTC time
mc_read_data Reading files with locality metadata
mc_read_files Reading files or directories
mc_read_long Reading data from long data.frame
mc_read_tubedb Reading data from TubeDB
mc_read_wide Reading data from wide data.frame
mc_reshape_long Export values to long table
mc_reshape_wide Export values to wide table
mc_save Save myClim object
mc_Sensor Class for sensor definition
mc_Sensor-class Class for sensor definition
mc_SensorMetadata Class for sensor metadata
mc_SensorMetadata-class Class for sensor metadata
mc_TOMSTDataFormat Class for reading Tomst logger files
mc_TOMSTDataFormat-class Class for reading Tomst logger files
mc_TOMSTJoinDataFormat Class for reading TMS join files
mc_TOMSTJoinDataFormat-class Class for reading TMS join files
myClimList Custom list for myClim object