Some Useful Functions for Statistics and Visualization

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Documentation for package ‘pcutils’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

add_alpha	Add alpha for a Rcolor
add_analysis	Add an analysis for a project
add_theme	Add a global gg_theme and colors for plots
areaplot	Plot a stack plot
change_fac_lev	Change factor levels
china_map	Plot china map
chunlian	Draw a Chunlian (Spring Festival couplet) using ggplot2
copy_df	Copy a data.frame
copy_vector	Copy a vector
count2	Like uniq -c in shell to count a vector
dabiao	Print some message with =
del_ps	Detach packages
df2link	df 2 link
DNA_plot	Plot a DNA double helix
download2	Download File
explode	Explode a data.frame if there are split charter in one column
fittest	Fit a distribution
generate_labels	Generate labels position
get_cols	Get n colors
get_doi	Download supplemental materials according to a doi
ggheatmap	Heatmap by ggplot
gghist	gg Histogram
gghuan	Plot a doughnut chart
gghuan2	gghuan2 for multi-doughnut chart
ggplot_lim	Get a ggplot xlim and ylim
give_you_a_rose	Give you a rose
grepl.data.frame	Grepl applied on a data.frame
group_box	Plot a boxplot
group_test	Performs multiple mean comparisons for a data.frame
gsub.data.frame	Gsub applied on a data.frame
guolv	Filter your data
hebing	Group your data
how_to_set_options	How to set options in a package
how_to_update_parameters	How to update parameters
how_to_use_parallel	How to use parallel
how_to_use_sbatch	How to use sbatch
is.ggplot.color	Judge if a characteristic is Rcolor
legend_size	Scale a legend size
lib_ps	Attach packages or install packages have not benn installed
little_guodong	My cat.
lm_coefficients	Get coefficients of linear regression model
make_gitbook	Make a Gitbook using bookdown
make_project	Make a R-analysis project
metadata	test data for pcutils package.
mmscale	Min_Max scale
multireg	Multiple regression/ variance decomposition analysis
multitest	Multi-groups test
my_cat	Show my little cat named Guo Dong which drawn by my girlfriend.
my_circle_packing	My Circle packing plot
my_circo	My circo plot
my_lm	Fit a linear model and plot
my_sunburst	My Sunburst plot
my_synteny	My synteny plot
my_treemap	My Treemap plot
my_voronoi_treemap	My Voronoi treemap plot
Olympic_rings	Plot the Olympic rings
otutab	test data for pcutils package.
plot.coefficients	Plot coefficients as a bar chart or lollipop chart
plotgif	Plot a gif
plotpdf	Plot a multi-pages pdf
pre_number_str	Prepare a numeric string
read.file	Read some special format file
read_fasta	Read fasta file
reinstall_my_packages	Re-install my packages
remove.outliers	Remove outliers
rgb2code	Transform a rgb vector to a Rcolor code
rm_low	Remove the low relative items in each column
sample_map	Plot the sampling map
sanxian	Three-line table
search_browse	Search and browse the web for specified terms
set_pcutils_config	Set config
show_pcutils_config	Show config
squash	Squash one column in a data.frame using other columns as id.
stackplot	Plot a stack plot
strsplit2	Split Composite Names
t2	Transpose data.frame
taxonomy	test data for pcutils package.
tax_pie	Pie plot
tax_wordcloud	Word cloud plot
tidai	Replace a vector by named vector
trans	Transfer your data
translator	translator
trans_format	Transfer the format of file
triangp	Triangle plot
twotest	Two-group test
update_param	Update the parameters
venn	Plot a general venn (upset, flower)
venn.data.frame	Plot a general venn (upset, flower)
venn.list	Plot a general venn (upset, flower)
write_fasta	Write a data.frame to fasta