Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines
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Documentation for package ‘pspline.inference’ version 1.0.4
Help Pages
| pspline.estimate.scalars | Calculates confidence intervals for scalars estimated from generalized additive (mixed) model of an outbreak |
| pspline.estimate.timeseries | Calculates confidence intervals for time series sampled from generalized additive (mixed) model of an outbreak |
| pspline.inference | Inference using penalized basis splines (P-splines) in a generalized additive model (GAM), with applications in infectious disease outbreak modeling |
| pspline.outbreak.calc.cumcases | Calculate cumulative incidence time series from incidence time series |
| pspline.outbreak.cases | Calculate cumulative incidence for an outbreak |
| pspline.outbreak.cumcases | Calculate cumulative incidence for an outbreak |
| pspline.outbreak.cumcases.relative | Calculate relative incidence for an outbreak |
| pspline.outbreak.thresholds | Calculate outbreak thresholds for an outbreak |
| pspline.validate.scalars | Run a simulation study to validate a scalar estimator |