Particle-Takens Stability

Documentation for package ‘pttstability’ version 1.1

colfun0	default colonization function
dat	Microcosm experimental data
density_fun0	Default density function for prior
detfun0	default deterministic function
detfun0_sin	deterministic function with time-varying carrying capacity
EDMfun0	REDM deterministic function
getcm	Get rates
ilogit	Inverse logit
indexsort	Sort output of particle filter
inv_fun0	Default inverse transormation function
likelihood0	Default likelihood function
likelihood_EDM_piecewise	calculate likelihood for piecewise data
logit	Logit
logitnormal_imode	Get inverse logit-normal mode
lognormal_imode	Get inverse log-normal mode
makedynamics_general	Simulate general time series
obsfun0	default observation noise function
parseparam0	Parse parameters
particleFilterLL	particle filter
particleFilterLL_piecewise	run particle filter across piecewise data
process_scof	Process s-mapping coefficients
procfun0	default process noise function
procfun_ct	continuous-time process noise function
pttstability	pttstability: Methods for Measuring Stability in Systems Without Static Equilibria
sampler_fun0	Default sampler function for prior
sdproc_abstract	calculate estimated total variance