Statistical Tools for Quantitative Genetic Analyses

Documentation for package ‘qgg’ version 1.1.1

acc	Compute prediction accuracy for a quantitative or binary trait
adjStat	LD adjustment of marker summary statistics
gbayes	Bayesian linear regression models
getG	Extract elements from genotype matrix stored on disk
gfilter	Quality control of marker summary statistics
glma	Single marker association analysis using linear models or linear mixed models
gprep	Prepare genotype data for all statistical analyses (initial step)
greml	GREML analysis
grm	Computing the genomic relationship matrix (GRM)
gscore	Genomic scoring based on single marker summary statistics
gsea	Gene set enrichment analysis
gsim	Genomic simulation
gsolve	Solve linear mixed model equations
ldsc	LD score regression
mtadj	Adjust marker effects based on correlated information
qcStat	Quality control of marker summary statistics
qgg	Implements Genomic Feature Linear Mixed Models using Likelihood or Bayesian Methods