Inference Tool for Antibody Haplotype

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Documentation for package ‘rabhit’ version 0.2.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.onAttach	.onAttach start message
createFullHaplotype	Anchor gene haplotype inference
deletionHeatmap	Graphical output of single chromosome deletions
deletionsByBinom	Double chromosome deletion by relative gene usage
deletionsByVpooled	Single chromosomal D or J gene deletions inferred by the V pooled method
GENE.loc	Human Gene order on the chromosome
geneUsage	Double chromosome deletion by relative gene usage
GERM	Human germlines
hapDendo	Hierarchical clustering of haplotypes graphical output
hapHeatmap	Graphical output of alleles division by chromosome
HDGERM	Human IGHD germlines
HJGERM	Human IGHJ germlines
HVGERM	Human IGHV germlines
KJGERM	Human IGKJ germlines
KVGERM	Human IGKV germlines
LJGERM	Human IGLJ germlines
LVGERM	Human IGKV germlines
nonReliableVGenes	Detect non reliable gene assignment
plotDeletionsByBinom	Graphical output of double chromosome deletions
plotDeletionsByVpooled	Graphical output for single chromosome D or J gene deletions according to V pooled method
plotHaplotype	Graphical output of an inferred haplotype
rabhit	The RAbHIT package
readHaplotypeDb	Read a Change-O tab-delimited database file
samplesHaplotype	Example haplotype inference results
samples_db	Example IGH human naive b-cell repertiore