# Clinical Graphs and Tables Adhering to Graphical Principles

## Documentation for package ‘visR’ version 0.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add_annotation | Add annotations to a visR object
add_CI | Add confidence interval (CI) to visR object
add_CI.ggsurvfit | Add confidence interval (CI) to visR object
add_CI.ggtidycuminc | Add confidence interval (CI) to visR object
add_CNSR | Add censoring symbols to a visR object
add_CNSR.ggsurvfit | Add censoring symbols to a visR object
add_CNSR.ggtidycuminc | Add censoring symbols to a visR object
add_highlight | Highlight a specific strata
add_highlight.ggsurvfit | Highlight a specific strata
add_quantiles | Add quantile indicators to visR plot
add_quantiles.ggsurvfit | Add quantile indicators to visR plot
add_risktable | Add risk tables to visR plots through an S3 method
add_risktable.ggsurvfit | Add risk tables to visR plots through an S3 method
add_risktable.ggtidycuminc | Add risk tables to visR plots through an S3 method
adtte | adtte - CDISC ADaM compliant time to event data set
align_plots | Align multiple ggplot graphs, taking into account the legend
apply_attrition | Apply list of inclusion/exclusion criteria to a patient-level dataframe
apply_theme | Applies a theme to a ggplot object.
brca_cohort | Cancer survival data
define_theme | Provides a simple wrapper for themes
estimate_cuminc | Competing Events Cumulative Incidence
estimate_KM | Wrapper for Kaplan-Meier Time-to-Event analysis
get_attrition | Generate cohort attrition table
get_COX_HR | Summarize Hazard Ratio from a survival object using S3 method
get_COX_HR.survfit | Summarize Hazard Ratio from a survival object using S3 method
get_pvalue | Summarize the test for equality across strata from a survival object using S3 method
get_quantile | Wrapper around quantile methods
get_quantile.survfit | Wrapper around quantile methods
get_risktable | Obtain risk tables for tables and plots
get_risktable.survfit | Obtain risk tables for tables and plots
get_risktable.tidycuminc | Obtain risk tables for tables and plots
get_summary | Summarize the descriptive statistics across strata from a survival object using S3 method
get_summary.survfit | Summarize the descriptive statistics across strata from a survival object using S3 method
get_tableone | Calculate summary statistics
get_tableone.default | Calculate summary statistics
legendopts | Translates options for legend into a list that can be passed to ggplot2
render | Render a data.frame, risktable, or tableone object as a table
StatStepribbon | Step ribbon statistic
stat_stepribbon | Step ribbon statistic
summarize_long | Calculate summary statistics from a vector
summarize_long.default | Calculate summary statistics from a vector
summarize_long.factor | Calculate summary statistics from a vector
summarize_long.integer | Calculate summary statistics from a vector
summarize_long.numeric | Calculate summary statistics from a vector
summarize_short | Create abbreviated variable summary for table1
summarize_short.default | Create abbreviated variable summary for table1
summarize_short.factor | Create abbreviated variable summary for table1
summarize_short.integer | Create abbreviated variable summary for table1
summarize_short.numeric | Create abbreviated variable summary for table1
Surv_CNSR | Create a Survival Object from CDISC Data
tableone | Display a summary Table (i.e. table one)
the_lhs | Find the "lhs" in the pipeline
tidyme | Extended tidy cleaning of selected objects using S3 method
tidyme.default | Extended tidy cleaning of selected objects using S3 method
tidyme.survfit | Extended tidy cleaning of selected objects using S3 method
visr | Plot a supported S3 object
visr.attrition | Plot a supported S3 object
visr.default | Plot a supported S3 object
visr.survfit | Plot a supported S3 object
visr.tidycuminc | Plot a supported S3 object