# Diagnostic Tools for Hierarchical (Multilevel) Linear Models

## Documentation for package ‘HLMdiag’ version 0.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

adjust_lmList | Fitting Common Models via 'lm'
adjust_lmList-method | Fitting Common Models via 'lm'
adjust_lmList.formula | Fitting Common Models via 'lm'
ahd | Methylprednisolone data
autism | Autism data
case_delete | Case Deletion for 'mer'/'lmerMod' objects
case_delete.default | Case Deletion for 'mer'/'lmerMod' objects
case_delete.lme | Case Deletion for 'mer'/'lmerMod' objects
case_delete.lmerMod | Case Deletion for 'mer'/'lmerMod' objects
case_delete.mer | Case Deletion for 'mer'/'lmerMod' objects
compare_eb_ls | Visually comparing shrinkage and LS estimates
cooks.distance | Influence on fixed effects of HLMs
cooks.distance.lme | Influence on fixed effects of HLMs
cooks.distance.lmerMod | Influence on fixed effects of HLMs
cooks.distance.mer | Influence on fixed effects of HLMs
covratio | Influence on precision of fixed effects in HLMs
covratio.default | Influence on precision of fixed effects in HLMs
covratio.lme | Influence on precision of fixed effects in HLMs
covratio.lmerMod | Influence on precision of fixed effects in HLMs
covratio.mer | Influence on precision of fixed effects in HLMs
covtrace | Influence on precision of fixed effects in HLMs
covtrace.default | Influence on precision of fixed effects in HLMs
covtrace.lme | Influence on precision of fixed effects in HLMs
covtrace.lmerMod | Influence on precision of fixed effects in HLMs
covtrace.mer | Influence on precision of fixed effects in HLMs
diagnostics | Defunct functions in package HLMdiag
dotplot_diag | Dot plots for influence diagnostics
extract_design | Extracting covariance matrices from lme
ggplot_qqnorm | Defunct functions in package HLMdiag
group_qqnorm | Defunct functions in package HLMdiag
HLMdiag | Diagnostic tools for hierarchical (multilevel) linear models
HLMdiag-defunct | Defunct functions in package HLMdiag
HLMdiag-deprecated | Deprecated functions in HLMdiag
HLMresid | Defunct functions in package HLMdiag
HLMresid.default | Defunct functions in package HLMdiag
HLMresid.lmerMod | Defunct functions in package HLMdiag
HLMresid.mer | Defunct functions in package HLMdiag
hlm_augment | Calculating residuals and influence diagnostics for HLMs 'hlm_augment' is used to compute residuals, fitted values, and influence diagnostics for a hierarchical linear model. The residuals and fitted values are computed using Least Squares(LS) and Empirical Bayes (EB) methods. The influence diagnostics are computed through one step approximations.
hlm_augment.default | Calculating residuals and influence diagnostics for HLMs 'hlm_augment' is used to compute residuals, fitted values, and influence diagnostics for a hierarchical linear model. The residuals and fitted values are computed using Least Squares(LS) and Empirical Bayes (EB) methods. The influence diagnostics are computed through one step approximations.
hlm_augment.lmerMod | Calculating residuals and influence diagnostics for HLMs 'hlm_augment' is used to compute residuals, fitted values, and influence diagnostics for a hierarchical linear model. The residuals and fitted values are computed using Least Squares(LS) and Empirical Bayes (EB) methods. The influence diagnostics are computed through one step approximations.
hlm_influence | Calculating influence diagnostics for HLMs
hlm_influence.default | Calculating influence diagnostics for HLMs
hlm_influence.lme | Calculating influence diagnostics for HLMs
hlm_influence.lmerMod | Calculating influence diagnostics for HLMs
hlm_resid | Calculating residuals from HLMs
hlm_resid.default | Calculating residuals from HLMs
hlm_resid.lme | Calculating residuals from HLMs
hlm_resid.lmerMod | Calculating residuals from HLMs
leverage | Leverage for HLMs
leverage.default | Leverage for HLMs
leverage.lme | Leverage for HLMs
leverage.lmerMod | Leverage for HLMs
leverage.mer | Leverage for HLMs
LSresids | Calculating least squares residuals
LSresids.default | Calculating least squares residuals
LSresids.lme | Calculating least squares residuals
LSresids.lmerMod | Calculating least squares residuals
LSresids.mer | Calculating least squares residuals
mdffits | Influence on fixed effects of HLMs
mdffits.default | Influence on fixed effects of HLMs
mdffits.lme | Influence on fixed effects of HLMs
mdffits.lmerMod | Influence on fixed effects of HLMs
mdffits.mer | Influence on fixed effects of HLMs
package-HLMdiag | Diagnostic tools for hierarchical (multilevel) linear models
pull_resid | Computationally Efficient HLM Residuals
pull_resid.default | Computationally Efficient HLM Residuals
pull_resid.lme | Computationally Efficient HLM Residuals
pull_resid.lmerMod | Computationally Efficient HLM Residuals
radon | Radon data
resid_conditional | Conditional residuals
resid_conditional.default | Conditional residuals
resid_conditional.lme | Conditional residuals
resid_conditional.lmerMod | Conditional residuals
resid_marginal | Marginal residuals
resid_marginal.default | Marginal residuals
resid_marginal.lme | Marginal residuals
resid_marginal.lmerMod | Marginal residuals
resid_ranef | Random effects residuals
rotate_ranef | Calculate s-dimensional rotated random effects
rotate_ranef.default | Calculate s-dimensional rotated random effects
rotate_ranef.lme | Calculate s-dimensional rotated random effects
rotate_ranef.lmerMod | Calculate s-dimensional rotated random effects
rotate_ranef.mer | Calculate s-dimensional rotated random effects
rvc | Relative variance change for HLMs
rvc.default | Relative variance change for HLMs
rvc.lme | Relative variance change for HLMs
rvc.lmerMod | Relative variance change for HLMs
rvc.mer | Relative variance change for HLMs
varcomp.mer | Extracting variance components
wages | Wages for male high school dropouts