barErrorPlot	barErrorPlot
barPlotCellTypes	barPlotCellTypes
barPlotCellTypes,ANY-method	barPlotCellTypes
barPlotCellTypes,DigitalDLSorter-method	barPlotCellTypes
blandAltmanLehPlot	blandAltmanLehPlot
bulk.simul	bulk.simul
bulk.simul,DigitalDLSorter-method	bulk.simul
bulk.simul<-	bulk.simul
bulk.simul<-,DigitalDLSorter-method	bulk.simul
calculateEvalMetrics	calculateEvalMetrics
cell.names	cell.names
cell.names,ProbMatrixCellTypes-method	cell.names
cell.names<-	cell.names
cell.names<-,ProbMatrixCellTypes-method	cell.names
cell.types	cell.types
cell.types,DigitalDLSorterDNN-method	cell.types
cell.types<-	cell.types
cell.types<-,DigitalDLSorterDNN-method	cell.types
corrExpPredPlot	corrExpPredPlot
createDDLSobject	createDDLSobject
deconv.data	deconv.data
deconv.data,DigitalDLSorter-method	deconv.data
deconv.data<-	deconv.data
deconv.data<-,DigitalDLSorter-method	deconv.data
deconv.results	deconv.results
deconv.results,DigitalDLSorter-method	deconv.results
deconv.results<-	deconv.results
deconv.results<-,DigitalDLSorter-method	deconv.results
deconvDDLSObj	deconvDDLSObj
deconvDigitalDLSorter	deconvDigitalDLSorter
DigitalDLSorter	DigitalDLSorter-class
digitalDLSorteR	digitalDLSorteR
DigitalDLSorter-class	DigitalDLSorter-class
DigitalDLSorterDNN	DigitalDLSorterDNN-class
DigitalDLSorterDNN-class	DigitalDLSorterDNN-class
distErrorPlot	distErrorPlot
estimateZinbwaveParams	estimateZinbwaveParams
features	features
features,DigitalDLSorterDNN-method	features
features<-	features
features<-,DigitalDLSorterDNN-method	features
generateBulkCellMatrix	generateBulkCellMatrix
getProbMatrix	getProbMatrix
installTFpython	installTFpython
listToDDLS	listToDDLS
listToDDLSDNN	listToDDLSDNN
loadDeconvData	loadDeconvData
loadDeconvData,DigitalDLSorter,character-method	loadDeconvData
loadDeconvData,DigitalDLSorter,SummarizedExperiment-method	loadDeconvData
loadTrainedModelFromH5	loadTrainedModelFromH5
method	method
method,ProbMatrixCellTypes-method	method
method<-	method
method<-,ProbMatrixCellTypes-method	method
model	model
model,DigitalDLSorterDNN-method	model
model<-	model
model<-,DigitalDLSorterDNN-method	model
plots	plots
plots,ProbMatrixCellTypes-method	plots
plots<-	plots
plots<-,ProbMatrixCellTypes-method	plots
plotTrainingHistory	plotTrainingHistory
preparingToSave	preparingToSave
prob.cell.types	prob.cell.types
prob.cell.types,DigitalDLSorter-method	prob.cell.types
prob.cell.types<-	prob.cell.types
prob.cell.types<-,DigitalDLSorter-method	prob.cell.types
prob.matrix	prob.matrix
prob.matrix,ProbMatrixCellTypes-method	prob.matrix
prob.matrix<-	prob.matrix
prob.matrix<-,ProbMatrixCellTypes-method	prob.matrix
ProbMatrixCellTypes	ProbMatrixCellTypes-class
ProbMatrixCellTypes-class	ProbMatrixCellTypes-class
project	project
project,DigitalDLSorter-method	project
project<-	project
project<-,DigitalDLSorter-method	project
saveRDS	saveRDS
saveRDS,DigitalDLSorter-method	saveRDS
saveRDS,DigitalDLSorterDNN-method	saveRDS
saveRDS,saveRDS-method	saveRDS
saveTrainedModelAsH5	saveTrainedModelAsH5
set	set
set,ProbMatrixCellTypes-method	set
set.list	set.list
set.list,ProbMatrixCellTypes-method	set.list
set.list<-	set.list
set.list<-,ProbMatrixCellTypes-method	set.list
set<-	set
set<-,ProbMatrixCellTypes-method	set
showProbPlot	showProbPlot
simBulkProfiles	simBulkProfiles
simSCProfiles	simSCProfiles
single.cell.real	single.cell.real
single.cell.real,DigitalDLSorter-method	single.cell.real
single.cell.real<-	single.cell.real
single.cell.real<-,DigitalDLSorter-method	single.cell.real
single.cell.simul	single.cell.simul
single.cell.simul,DigitalDLSorter-method	single.cell.simul
single.cell.simul<-	single.cell.simul
single.cell.simul<-,DigitalDLSorter-method	single.cell.simul
test.deconv.metrics	test.deconv.metrics
test.deconv.metrics,DigitalDLSorterDNN-method	test.deconv.metrics
test.deconv.metrics<-	test.deconv.metrics
test.deconv.metrics<-,DigitalDLSorterDNN-method	test.deconv.metrics
test.metrics	test.metrics
test.metrics,DigitalDLSorterDNN-method	test.metrics
test.metrics<-	test.metrics
test.metrics<-,DigitalDLSorterDNN-method	test.metrics
test.pred	test.pred
test.pred,DigitalDLSorterDNN-method	test.pred
test.pred<-	test.pred
test.pred<-,DigitalDLSorterDNN-method	test.pred
trainDDLSModel	trainDDLSModel
trained.model	trained.model
trained.model,DigitalDLSorter-method	trained.model
trained.model<-	trained.model
trained.model<-,DigitalDLSorter-method	trained.model
training.history	training.history
training.history,DigitalDLSorterDNN-method	training.history
training.history<-	training.history
training.history<-,DigitalDLSorterDNN-method	training.history
zinb.params	zinb.params
zinb.params,DigitalDLSorter-method	zinb.params
zinb.params<-	zinb.params
zinb.params<-,DigitalDLSorter-method	zinb.params
ZinbParametersModel	ZinbParametersModel-class
ZinbParametersModel-class	ZinbParametersModel-class
zinbwave.model	zinbwave.model
zinbwave.model,ZinbParametersModel-method	zinbwave.model
zinbwave.model<-	zinbwave.model
zinbwave.model<-,ZinbParametersModel-method	zinbwave.model
