# Generalized Pairwise Comparisons

## Documentation for package ‘BuyseTest’ version 3.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BuyseTest-package | BuyseTest package: Generalized Pairwise Comparisons
.colCenter_cpp | Substract a vector of values in each column
.colCumSum_cpp | Column-wise cumulative sum
.colMultiply_cpp | Multiply by a vector of values in each column
.colScale_cpp | Divide by a vector of values in each column
.rowCenter_cpp | Substract a vector of values in each row
.rowCumProd_cpp | Apply cumprod in each row
.rowCumSum_cpp | Row-wise cumulative sum
.rowMultiply_cpp | Multiply by a vector of values in each row
.rowScale_cpp | Dividy by a vector of values in each row
alloc-method | Methods for the class "BuyseTest.options"
as.data.table.performance | Convert Performance Objet to data.table
auc | Estimation of the Area Under the ROC Curve (EXPERIMENTAL)
autoplot.S3sensitivity | Graphical Display for Sensitivity Analysis
autoplot.S4BuyseTest | Graphical Display for GPC
brier | Estimation of the Brier Score (EXPERIMENTAL)
BuyseMultComp | Adjustment for Multiple Comparisons
BuyseTest | Two-group GPC
BuyseTest.options | Global options for BuyseTest package
BuyseTest.options-class | Class "BuyseTest.options" (global setting for the BuyseTest package)
BuyseTest.options-methods | Methods for the class "BuyseTest.options"
BuyseTTEM | Time to Event Model
BuyseTTEM.BuyseTTEM | Time to Event Model
BuyseTTEM.formula | Time to Event Model
BuyseTTEM.prodlim | Time to Event Model
BuyseTTEM.survreg | Time to Event Model
CasinoTest | Multi-group GPC (EXPERIMENTAL)
CHARM | RCT In Chronic Heart Failure Assessing an Inhibitor of the Renin-Angiotensin System.
coef-method | Extract Summary Statistics from GPC
coef.BuyseTestAuc | Extract the AUC Value
coef.BuyseTestBrier | Extract the Brier Score
confint-method | Extract Confidence Interval from GPC
confint.BuyseTestAuc | Extract the AUC value with its Confidence Interval
confint.BuyseTestBrier | Extract the Brier Score with its Confidence Interval
constStrata | Strata creation
EB | Rare disease trial
efronlim | Constrained Kaplan-Meier Estimator
getCount | Extract the Number of Favorable, Unfavorable, Neutral, Uninformative pairs
getCount-method | Extract the Number of Favorable, Unfavorable, Neutral, Uninformative pairs
getIid | Extract the H-decomposition of the Estimator
getIid-method | Extract the H-decomposition of the Estimator
getPairScore | Extract the Score of Each Pair
getPairScore-method | Extract the Score of Each Pair
getPseudovalue | Extract the pseudovalues of the Estimator
getPseudovalue-method | Extract the pseudovalues of the Estimator
getSurvival | Extract the Survival and Survival Jumps
getSurvival-method | Extract the Survival and Survival Jumps
iid.BuyseTestAuc | Extract the idd Decomposition for the AUC
iid.BuyseTestBrier | Extract the idd Decomposition for the Brier Score
iid.prodlim | Extract i.i.d. decomposition from a prodlim model
model.tables-method | Extract Summary for Class "S4BuysePower"
model.tables-method | Extract Summary for Class "S4BuyseTest"
mover | Inference using MOVER in match designs (EXPERIMENTAL)
nobs-method | Sample Size for Class "S4BuysePower"
nobs-method | Sample Size for Class "S4BuyseTest"
performance | Assess Performance of a Classifier
performanceResample | Uncertainty About Performance of a Classifier (EXPERIMENTAL)
plot-method | Graphical Display for GPC
plot.S3sensitivity | Graphical Display for Sensitivity Analysis
powerBuyseTest | Performing simulation studies with BuyseTest
predict.BuyseTTEM | Prediction with Time to Event Model
print-method | Print Method for Class "S4BuysePower"
print-method | Print Method for Class "S4BuyseTest"
prodige | RCT In Metastatic Pancreatic Cancer Comparing Two Chemoterapy.
rbind.performance | Combine Resampling Results For Performance Objects
S4BuysePower-class | Class "S4BuysePower" (output of BuyseTest)
S4BuysePower-model.tables | Extract Summary for Class "S4BuysePower"
S4BuysePower-nobs | Sample Size for Class "S4BuysePower"
S4BuysePower-print | Print Method for Class "S4BuysePower"
S4BuysePower-show | Show Method for Class "S4BuysePower"
S4BuysePower-summary | Summary Method for Class "S4BuysePower"
S4BuyseTest-class | Class "S4BuyseTest" (output of BuyseTest)
S4BuyseTest-coef | Extract Summary Statistics from GPC
S4BuyseTest-confint | Extract Confidence Interval from GPC
S4BuyseTest-model.tables | Extract Summary for Class "S4BuyseTest"
S4BuyseTest-nobs | Sample Size for Class "S4BuyseTest"
S4BuyseTest-plot | Graphical Display for GPC
S4BuyseTest-print | Print Method for Class "S4BuyseTest"
S4BuyseTest-show | Show Method for Class "S4BuysePower"
S4BuyseTest-summary | Summary Method for Class "S4BuyseTest"
S4BuyseTest-update | Re-run two-group GPC
S4BuyseTest-vcov | Extract Uncertainty from GPC
select-method | Methods for the class "BuyseTest.options"
sensitivity | Sensitivity Analysis for the Choice of the Thresholds
sensitivity-method | Sensitivity Analysis for the Choice of the Thresholds
show-method | Show Method for Class "S4BuysePower"
simBuyseTest | Simulation of data for the BuyseTest
simCompetingRisks | Simulation of Gompertz competing risks data for the BuyseTest
summary-method | Summary Method for Class "S4BuysePower"
summary-method | Summary Method for Class "S4BuyseTest"
summary.performance | Summary Method for Performance Objects
update-method | Re-run two-group GPC
vcov-method | Extract Uncertainty from GPC