Novel Methods for Reproduction Number Estimation,
Back-Calculation, and Forecasting
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Documentation for package ‘WhiteLabRt’ version 1.0.1
Help Pages
| WhiteLabRt-package | The 'WhiteLabRt' package. |
| convert_to_linelist | Convert Case Counts to a Line List |
| create_caseCounts | Create a Case Counts Data Frame |
| create_linelist | Create a Line List from Report and Onset Dates |
| out_list_demo | Sample back-calculation output |
| plot.backnow | Plot Estimates or Reproduction Numbers |
| plot.caseCounts | Plot Case Counts Over Time |
| run_backnow | Run Back Calculation and Estimate Reproduction Numbers |
| sample_cases | Sample cases |
| sample_dates | Sample dates |
| sample_location | Sample location |
| sample_multi_site | Sample multi site |
| sample_m_hier | Sample hierachical model output |
| sample_onset_dates | Sample onset dates |
| sample_report_dates | Sample report dates |
| si | Calculate a Serial Interval Distribution |
| spatialRt | Run Spatial R(t) estimation and Estimate Reproduction Numbers |
| transfer_matrix | Transfer matrix |
| WhiteLabRt | The 'WhiteLabRt' package. |