Missing Person Identification Tools

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Documentation for package ‘mispitools’ version 2.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

mispitools-package	mispitools: Missing Person Identification Tools
Argentina	STR Allele Frequencies from Argentina
Asia	STR Allele Frequencies from Asian Populations
as_lr_dist	Coerce to a Likelihood-Ratio Distribution Object
Austria	STR Allele Frequencies from Austria
belief_trajectory	Compute a belief trajectory from sequential evidence
binary_belief_trajectory	Compute a binary belief trajectory from per-marker likelihood ratios
BosniaHerz	STR Allele Frequencies from Bosnia and Herzegovina
calibrate_concentration_cutoff	Calibrate pedigree-specific concentration cutoff
China	STR Allele Frequencies from China
compute_conditioned_prop	Compute Conditioned Proportions for Pigmentation Traits
compute_reference_prop	Compute Reference Population Proportions for Pigmentation Traits
concentration_index	Concentration index of per-step evidence contributions
concentration_index_positive	Inclusion-fragility concentration index (positive weights only)
cpt_missing_person	Missing Person-Based Conditional Probability Table
cpt_population	Population-Based Conditional Probability Table
decision_threshold	Compute Optimal Decision Threshold
entropy_log10	Shannon entropy in base-10 (bans)
error_matrix_hair	Hair Color Error/Confusion Matrix
Europe	STR Allele Frequencies from Europe
familias_trajectory	Belief trajectory metrics from a 'Familias::FamiliasPosterior' result
fragility_report	Per-case fragility report
get_allele_freqs	Get Allele Frequencies in pedtools Format
herfindahl_index	Herfindahl-Hirschman concentration of evidence contributions
Japan	STR Allele Frequencies from Japan
kl_divergence_log10	Kullback-Leibler divergence in base-10 (bans)
leave_one_out	Leave-one-out fragility analysis of evidence contributions
lr_age	Likelihood Ratio for Age Variable
lr_birthdate	Likelihood Ratio for Birth Date
lr_combine	Combine Likelihood Ratios from Multiple Sources
lr_compute_pigmentation	Compute Likelihood Ratios for Pigmentation Traits
lr_distribution	Composed likelihood-ratio distribution over a marker profile
lr_hair_color	Likelihood Ratio for Hair Color
lr_pigmentation	Simulate LR Distributions for Pigmentation Traits
lr_sensitivity	Sensitivity Analysis for Likelihood Ratios
lr_sex	Likelihood Ratio for Biological Sex
lr_to_dataframe	Convert Genetic LR Simulations to Data Frame
marker_model	Marker model (S3)
mispitools	mispitools: Missing Person Identification Tools
mispitools_app	Comprehensive Shiny App for Missing Person Identification
nongenetic_feature	Non-genetic feature model (S3)
per_marker_kl	Per-marker bidirectional Kullback-Leibler divergence and expected log10 LR
per_marker_kl_profile	Per-marker bidirectional KL across a marker profile
plot.lr_dist	Plot a Likelihood-Ratio Distribution
plot_cpt	Plot Conditional Probability Tables Comparison
plot_decision_curve	Plot Decision Curve (FPR vs FNR)
plot_lr_distribution	Plot Likelihood Ratio Distributions
print.marker_model	Print method for marker_model
print.nongenetic_feature	Print method for nongenetic_feature
quantile.lr_dist	Quantiles of a likelihood-ratio distribution
shannon_concentration	Shannon-entropy-based concentration of evidence contributions
sim_lr_genetic	Simulate Likelihood Ratios from Genetic Data
sim_lr_prelim	Simulate Likelihood Ratios from Preliminary Investigation Data
sim_mp_prelim	Simulate Preliminary Investigation Data for Missing Persons
sim_poi_prelim	Simulate Preliminary Investigation Data for Persons of Interest
sim_reference_pop	Simulate Reference Population with Pigmentation Traits
summary.lr_dist	Summarise a Likelihood-Ratio Distribution
threshold_rates	Compute Error Rates at a Specific Threshold
trajectory_metrics	Trajectory metrics from a belief trajectory matrix
USA	STR Allele Frequencies from United States