# Genetic Analysis of Pooled Samples

## Documentation for package ‘pooledpeaks’ version 1.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

AlRich | Calculate Allelic Richness
associate_dyes | Associate Dye Names in Batch Import Output
BootStrap3 | Perform Bootstrap Analysis
check_fsa_v_batch | Check .fsa Version and Batch Information
clean_scores | Clean Scores Data
cluster | K-means Clustering
ClusterFromSamples | Cluster From Samples
data_manipulation | Data Manipulation for Marker Data
DistCor | Distance Correlation
EmpiricalSE | Calculate Empirical Standard Error
fsa_batch_imp | Batch Import of .fsa files
fsa_metadata | Retrieve Metadata
GeneIdentityMatrix | Gene Identity Matrix
GeneticDistanceMatrix | Genetic Distance Matrix
GST | Nei's GST
JostD | Calculate Jost's D
JostD_KK | Pairwise Jost D between replicates
lf_to_tdf | Transform LF to TDF
LoadData | Load Genetic Data
MDSplot | Multi Dimensional Scaling (MDS) Plot
PCDM | Post-consolidation Data Manipulation
preGST | Pre GST Calculation
preJostD | Calculate Pre-Jost's D
Rep_check | Replicate Check for Duplicate Samples
RWCDistanceMatrix | Random Walk Covariance Distance Matrix
SampleOfLoci | Sample Of Loci
score_markers_rev3 | Score Markers Wrapper
TwoLevelGST | Calculate Two-Level GST
TypedLoci | Typed Loci