'VigiBase' Pharmacovigilance Database Toolbox

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Documentation for package ‘vigicaen’ version 0.16.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_adr	Add ADR column(s) to a dataset
add_drug	Add DRUG column(s) to a dataset (tidyverse syntax)
adr_	Data of immune checkpoint inhibitors.
cff	Fast formatting of numbers
check_dm	Check binary variables
compute_dispro	Compute disproportionality
compute_interaction	Compute interaction disproportionality
compute_or_mod	Compute (r)OR from a model summary
create_example_tables	Example source tables for VigiBase and MedDRA
create_ex_main_pq	Example source tables for VigiBase and MedDRA
create_ex_main_txt	Example source tables for VigiBase and MedDRA
create_ex_meddra_asc	Example source tables for VigiBase and MedDRA
create_ex_sub_pq	Example source tables for VigiBase and MedDRA
create_ex_sub_txt	Example source tables for VigiBase and MedDRA
create_ex_who_txt	Example source tables for VigiBase and MedDRA
demo_	Data of immune checkpoint inhibitors.
desc_cont	Summarize continuous variables
desc_dch	Dechallenge descriptive
desc_facvar	Summarise categorical variables
desc_outcome	Outcome descriptive
desc_rch	Rechallenge descriptive
desc_tto	Time to onset descriptive
drug_	Data of immune checkpoint inhibitors.
dt_fst	Read fst and convert to data.table
dt_parquet	Read parquet and convert to data.table
extract_tto	Time to onset extraction
ex_	Data for the immune checkpoint inhibitors example
followup_	Data of immune checkpoint inhibitors.
get_atc_code	Get ATC codes (DrecNos or MPIs)
get_drecno	Get DrecNo from drug names or MedicinalProd_Id
get_llt_smq	Extract low level terms from SMQs
get_llt_soc	Extract low level terms from soc classification
ic_tail	Credibility interval limits for the information component
ind_	Data of immune checkpoint inhibitors.
link_	Data of immune checkpoint inhibitors.
meddra_	Sample of Meddra.
mp_	Sample of WHODrug
nice_p	Nice printing of p-values
out_	Data of immune checkpoint inhibitors.
screen_adr	Screening of Adverse Drug Reactions
screen_drug	Screening of Drugs
smq_content_	Sample of Meddra.
smq_list_	Sample of Meddra.
smq_list_content_	Sample of Meddra.
srce_	Data of immune checkpoint inhibitors.
tb_meddra	Create MedDRA tables
tb_subset	Extract of subset of Vigibase
tb_vigibase	Create main VigiBase ECL tables
tb_who	Create main WHO tables
thg_	Sample of WHODrug
vigi_routine	Pharmacovigilance routine function