Rank-Based Compositional Analysis using Log-Linear Models for Microbiome Data with Zero Cells

---

Documentation for package ‘CAFT’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

caft	Rank-Based Compositional Analysis using Log-Linear Models for Microbiome Data with Zero Cells
caft_bootstrap	Bootstrap Calibration for CAFT Tests
caft_estimate	Unrestricted CAFT Estimation
caft_test	CAFT Restricted Score Test
Colon	Example colon microbiome dataset
otuboxplot	Generates a ggplot2-based boxplot showing the relative abundance of a specified OTU (Operational Taxonomic Unit) across different sample groups.
print.caft_est	Print Method for Unrestricted CAFT Estimation
print.caft_test	Print Method for CAFT Restricted Score Test
URT	URT upper respiratory tract microbiome data (filtered)