# Project GENIE BioPharma Collaborative Data Processing Pipeline

## Documentation for package ‘genieBPC’ version 2.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

check_genie_access | Check Access to GENIE Data
cohort_institution | List of Institutions by Cohort
create_analytic_cohort | Select cohort of patients for analysis
drug_regimen_list | List of Drug Regimen Names by Cohort
drug_regimen_sunburst | Visualize drug regimen sequences in a sunburst plot
genie_panels | Genomic Panels Included in GENIE BPC Data
nsclc_test_data | Simulated fake GENIE BPC data for function examples and tests
pull_data_synapse | Obtain clinical & genomic data files for GENIE BPC Project
regimen_abbreviations | List of Drug Regimen Abbreviations
select_unique_ngs | Selecting corresponding unique next generation sequencing reports
set_synapse_credentials | Connect to 'Synapse' API
synapse_tables | 'Synapse' table IDs
synapse_version | Return list of available GENIE BPC data releases