anova.layered           Analysis of Deviance for return object from
                        'layer.analyzer'.
bi.lext                 A dataset of reed warbler body mass over
                        several years.
br.lext                 A dataset of reed warbler body mass over
                        several years.
br.lorig                A dataset of reed warbler body mass over
                        several years.
compare.layered         Perform comparison of several models for the
                        same dataset(s).
hare.norm               A dataset of hare catchment data from the
                        Hudson Bay Company.
hare.orig               A dataset of hare catchment data from the
                        Hudson Bay Company.
layer.analyzer          Time series analysis tool using linear layered
                        SDEs.
layer.analyzer.timeseries.list
                        Time series analysis tool using linear layered
                        SDEs.
layer.connections       Alternative connection specification, taking a
                        structure list.
layer.connections.list
                        Alternative connection specification, taking a
                        structure list.
layer.data.series       Represents a measurement time series.
layer.load.prior        Reading prior specification for the
                        layer.analyzer from a file.
layer.pairs             Alternative connection specification, taking a
                        structure list.
layer.pairs.list        Alternative connection specification, taking a
                        structure list.
layer.param.loglik      Returning log-likelihood for a set of parameter
                        values.
layer.param.logliks     Returning log-likelihoods for a set of
                        parameter value sets.
layer.predict.estimate
                        Prediction based on previously performed
                        analysis using single point estimate for the
                        parameter set
layer.predict.mcmc      Prediction based on previously performed MCMC
                        analysis
layer.predict.mcmc.list
                        Prediction based on previously performed MCMC
                        analysis
layer.prior             Specifying a prior distribution for the
                        layer.analyzer.
layer.series.structure
                        Represents a measurement time series.
layer.standard.log.prior
                        Specifying a suggestion for prior distribution,
                        for data that will be log-transformed.
layer.standard.prior    Specifying a default prior distribution for the
                        layer.analyzer.
layer.struct.name       Generate a description of the process structure
                        of a time series.
layer.wide.prior        Specifying a suggestion for a wide (little
                        information) prior distribution.
layeranalyzer           Time Series Analysis Tool using Linear Layered
                        SDEs
logLik.layered          Return maximum likelihood on the logarithmic
                        scale for return object from 'layer.analyzer'.
lrate.pr                A "layer.prior" object used for
                        diversifications rate analysis.
lynx.norm               A dataset of lynx catchment data from the
                        Hudson Bay Company.
lynx.orig               A dataset of lynx catchment data from the
                        Hudson Bay Company.
malta                   A dataset of reed warbler body mass over
                        several years.
n.combinations          Returns all ways of combining 'n' objects going
                        form 0 to <base>.
nobs.layered            Return number of observations for return object
                        from 'layer.analyzer'.
print.layer.series.structure
                        Outputs the description of a
                        'layer'series'structure' object.
print.summary.layered   Summarizes the return object from
                        'layer.analyzer'.
read.layer.data.series
                        Read a series representing a measurement time
                        series.
stepwise.connections.layered
                        Time series analysis tool using linear layered
                        SDEs.
summary.layered         Summarizes the return object from
                        'layer.analyzer'.
traverse.connections.layered
                        Time series analysis tool using linear layered
                        SDEs.
traverse.standalone.layered
                        Model traversal tool for standalone time
                        series.
