Package: tcpl
Title: ToxCast Data Analysis Pipeline
Version: 3.3.1
Authors@R: c(
    person("Dayne L", "Filer", role = "aut"),
    person("Jason", "Brown", role = "ctb", comment = c(ORCID = "0009-0000-2294-641X")),
    person("Madison","Feshuk",role = "cre",email = "feshuk.madison@epa.gov", comment = c(ORCID = "0000-0002-1390-6405")),
    person("Carter", "Thunes", role = "ctb"),
    person("Sarah E", "Davidson-Fritz", role = "ctb", email = "davidsonfritz.sarah@epa.gov", comment = c(ORCID = "0000-0002-2891-9380")),
    person("Kelly", "Carstens", role = "ctb", email = "carstens.kelly@epa.gov", comment = c(ORCID = "0000-0002-1746-5379")),
    person("Elizabeth", "Gilson", role = "ctb"),
    person("Lindsay","Knupp", role="ctb"),
    person("Lori","Kolaczkowski", role = "ctb"),
    person("Ashley", "Ko", role = "ctb"),
    person("Zhihui","Zhao", role="ctb"),
    person("Kurt", "Dunham", role = "ctb"),
    person("Todd", "Zurlinden", role="ctb", comment = c(ORCID = "0000-0003-1372-3913")),
    person("Parth", "Kothiya", role = "ctb"),
    person("Woodrow R", "Setzer", role = "ctb"),
    person("Matthew T", "Martin", role = c("ctb", "ths")),
    person("Richard S", "Judson",role = c("ctb","ths"), comment = c(ORCID = "0000-0002-2348-9633")),
    person("Katie", "Paul Friedman", role=c("ctb"), comment = c(ORCID = "0000-0002-2710-1691"))
    )
Description: The ToxCast Data Analysis Pipeline ('tcpl') is an R package that manages, curve-fits, plots, and stores ToxCast data to populate its linked MySQL database, 'invitrodb'. The package was developed for the chemical screening data curated by the US EPA's Toxicity Forecaster (ToxCast) program, but 'tcpl' can be used to support diverse chemical screening efforts.
URL: https://github.com/USEPA/CompTox-ToxCast-tcpl,
        https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast
Depends: R (>= 4.1.0)
Imports: data.table (>= 1.15.0), DBI, RMariaDB, numDeriv, RColorBrewer,
        utils, stats, methods, graphics, grDevices, sqldf, dplyr,
        tidyr, plotly, tcplfit2, ggplot2 (>= 3.5.2), gridExtra,
        stringr, rlang, ctxR (>= 1.1.3), viridis, gt
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat
        (>= 3.0.0), reshape2, kableExtra, colorspace, magrittr, vdiffr,
        httptest, rmdformats, gtable
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
BugReports: https://github.com/USEPA/CompTox-ToxCast-tcpl/issues
NeedsCompilation: no
Packaged: 2025-10-16 18:56:05 UTC; MFeshuk
Author: Dayne L Filer [aut],
  Jason Brown [ctb] (ORCID: <https://orcid.org/0009-0000-2294-641X>),
  Madison Feshuk [cre] (ORCID: <https://orcid.org/0000-0002-1390-6405>),
  Carter Thunes [ctb],
  Sarah E Davidson-Fritz [ctb] (ORCID:
    <https://orcid.org/0000-0002-2891-9380>),
  Kelly Carstens [ctb] (ORCID: <https://orcid.org/0000-0002-1746-5379>),
  Elizabeth Gilson [ctb],
  Lindsay Knupp [ctb],
  Lori Kolaczkowski [ctb],
  Ashley Ko [ctb],
  Zhihui Zhao [ctb],
  Kurt Dunham [ctb],
  Todd Zurlinden [ctb] (ORCID: <https://orcid.org/0000-0003-1372-3913>),
  Parth Kothiya [ctb],
  Woodrow R Setzer [ctb],
  Matthew T Martin [ctb, ths],
  Richard S Judson [ctb, ths] (ORCID:
    <https://orcid.org/0000-0002-2348-9633>),
  Katie Paul Friedman [ctb] (ORCID:
    <https://orcid.org/0000-0002-2710-1691>)
Maintainer: Madison Feshuk <feshuk.madison@epa.gov>
Repository: CRAN
Date/Publication: 2025-10-17 11:20:03 UTC
Built: R 4.6.0; ; 2026-04-07 14:34:44 UTC; unix
