# Compute and Illustrate the Multiple Facets of Functional Diversity

## Documentation for package ‘mFD’ version 1.0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

alpha.fd.fe | Compute the set of indices based on number of species in Functional Entities
alpha.fd.fe.plot | Illustrate Functional Diversity indices based on Functional Entities
alpha.fd.hill | Compute Functional alpha-Diversity indices based on Hill Numbers
alpha.fd.multidim | Compute a set of alpha functional indices for a set of assemblages
alpha.multidim.plot | Plot functional space and chosen functional indices
asb.sp.summary | Summarize Assemblage x Species data frame
background.plot | Plot background of multidimensional plots
baskets_fruits_weights | Dataset: Baskets Composition in Fruits Species
beta.fd.hill | Compute Functional beta-Diversity indices based on Hill Numbers
beta.fd.multidim | Compute Functional beta-Diversity indices for pairs of assemblages in a multidimensional space
beta.multidim.plot | Illustrate Functional beta-Diversity indices for pairs of assemblages in a multidimensional space
dist.nearneighb | Compute distance of a given point to its nearest neighbor in the functional space and the identity of the nearest neighbor
dist.point | Compute distances of all points to a given point in the functional space
dist.to.df | Merge distance object(s) into a single data frame
fdis.plot | Plot FDis index
fdiv.plot | Plot FDiv indice
feve.plot | Plot FEve index
fide.plot | Plot FIde index
fnnd.plot | Plot FNND index
fori.plot | Plot FOri
fric.plot | Plot FRic index
fruits_traits | Dataset: Traits Values of Fruits Species
fruits_traits_cat | Dataset: Fruits Traits Informations
fspe.plot | Plot FSpe
funct.dist | Compute functional distance between species
funct.space.plot | Plot species position in a functional space
fuse | Compute FUSE (Functionally Unique, Specialized and Endangered)
mst.computation | Compute the Minimum Spanning Tree (MST) linking species of a given assemblage
panels.to.patchwork | Plot individual plots along a pair of functional axes into a unique graph
pool.plot | Plot species from the pool
quality.fspaces | Compute functional spaces and their quality
quality.fspaces.plot | Plot functional space quality with a chosen quality metric
sp.filter | Retrieve information about species in a given assemblage
sp.to.fe | Compute Functional Entities composition based on a Species x Traits matrix
sp.tr.summary | Summarize Species x Traits data frame
tr.cont.fspace | Build a functional space based on continuous traits only
tr.cont.scale | Scale continuous traits
traits.faxes.cor | Correlation between Traits and Axes
vertices | Compute vertices of the Minimal Convex Hull shaping species from a single assemblage in a multidimensional functional space