# Resolution-Optimised SNPs Searcher

## Documentation for package ‘minSNPs’ version 0.0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calculate_percent | 'calculate_percent'
calculate_simpson | 'calculate_simpson'
cal_fn | 'cal_fn'
cal_fp | 'cal_fp'
check_fasta_meta_mapping | 'check_fasta_meta_mapping'
check_percent | 'check_percent'
extend_length | 'extend_length'
find_optimised_snps | 'find_optimised_snps'
full_merge | 'full_merge'
full_merge_1 | 'full_merge_1'
generate_kmers | 'generate_kmers'
generate_kmer_search_string | 'generate_kmer_search_string'
generate_pattern | 'generate_pattern'
generate_snp_search_string | 'generate_snp_search_string'
get_metric_fun | 'get_metric_fun'
identify_overlaps | 'identify_overlaps'
iterate_merge | 'iterate_merge'
match_count | 'match_count'
merge_fasta | 'merge_fasta'
output_result | 'output_result'
output_to_files | 'output_to_files'
process_allele | 'process_allele'
read_fasta | 'read_fasta'
read_sequences_from_fastq | 'read_sequences_from_fastq'
resolve_IUPAC_missing | 'resolve_IUPAC_missing'
reverse_complement | 'reverse_complement'
view_percent | 'view_percent'
view_simpson | 'view_simpson'
write_fasta | 'write_fasta'