Shared, Correlated, Additive, and Zero-Inflated Frailty Models

Documentation for package ‘FrailtyPackPlus’ version 0.1.0

DESCRIPTION file

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-- A --

AIC.ziprom_fit	Methods for ziprom_fit Objects
austrian_twin	Dataset documentation for Frailty package Australian Twin Appendectomy Data

-- B --

base_cumhaz	Cumulative Baseline Hazard Function
base_haz	Baseline Hazard Function
bayes_factor	Bayes Factor Comparison Between Two Models
bayes_factor_rhr	Bayes Factor Calculation for Model Comparison
BIC.ziprom_fit	Methods for ziprom_fit Objects

-- C --

calc_bayes_factor	Model Selection Criteria and Bayes Factor Comparisons
calc_loss_estimates	Bayesian Point Estimation and Posterior Risks under Multiple Loss Functions
calc_model_criteria	Model Selection Criteria and Bayes Factor Comparisons
classH	Modified Class-H Failure Modes Data
coef.oneshot_kofm	Extract Model Coefficients
coef.ziprom_fit	Methods for ziprom_fit Objects
compare_rhr_models	Compare Competing Shared RHR Frailty Models
component_moments	Expected Component Lifetimes and Moments
component_moments.oneshot_frailty	Marginal Moments for Components under Shared Gamma Frailty
component_moments.oneshot_kofm	Marginal Component Moments
compute_mcmc_diagnostics	Convergence and Summary Diagnostics for MCMC Chains
compute_p0_p1	Compute Multinomial Logit Probabilities for Zero-Inflation and Cure Fraction
compute_probabilities	Joint Survival and Subset Malfunction Probabilities
cond_prob_rhr	Conditional Probability Measure under Reversed Hazard Rate
confint.oneshot_kofm	Confidence Intervals for Model Parameters
confint.ziprom_fit	Methods for ziprom_fit Objects
corrFrailty	Fit Correlated Frailty Models for Bivariate Survival Data
corrFrailty.control	Control Parameters for corrFrailty Estimation
cpo	Conditional Predictive Ordinate (CPO) and Log Pseudo Marginal Likelihood (LPML)
crhr_baseline	Baseline Cumulative Reversed Hazard Rate Function
criteria	Model Selection Criteria and Bayes Factor Comparisons
cross_ratio_rhr	Clayton-Oakes Cross-Ratio Function under Reversed Hazard Rate

-- D --

d2laplace_frailty	Second Derivative of Laplace Transform of Frailty Distributions
dens_proper	Proper Conditional Density Function for Susceptible Group
dependence	Dependence Measures and Theoretical Frailty Variance
diagnostics_mcmc	MCMC Convergence Diagnostics
dic	Deviance Information Criterion (DIC)
dlaplace_frailty	First Derivative of Laplace Transform of Frailty Distributions
d_rhr_baseline	Baseline Probability Density Function under Reversed Hazard Rate

-- E --

eaic	Expected Akaike Information Criterion (EAIC)
ebic	Expected Bayesian Information Criterion (EBIC)
em_oneshot_frailty	Expectation-Maximization Algorithm for One-Shot Device Testing Data
em_oneshot_kofm	Expectation-Maximization Algorithm for One-Shot Devices
evaluate_ziprom	Evaluation Metrics and Residual Diagnostics for Zero-Inflated Promotion Models

-- F --

fb_sim_frailty	Simulate Survival Data with Shared or Univariate Frailty
fisher_info_oneshot	Observed Fisher Information Matrix for One-Shot Devices
fitted.oneshot_kofm	Extract Fitted Values
fit_add_frailty_bayes	Bayesian Estimation for Additive Shared Frailty Models via MCMC
fit_add_frailty_mle	Maximum Likelihood Estimation for Additive Shared Frailty Models
fit_rhr_frailty_bayes	Bayesian Estimation of Shared Frailty Models under Reversed Hazard Rate
fit_rhr_frailty_mle	Maximum Likelihood Estimation for Shared RHR Frailty Models
forecast_ziprom	Multi-Level Significance Survival Forecasting
frailty_bayes	Bayesian Estimation of Shared, Additive, and Multiplicative Frailty Models
frailty_compare	Model Comparison Table for Frailty Models
frailty_fit	Unified Formula Interface for Frailty Models
frailty_mle	Maximum Likelihood Estimation of Shared Frailty Models
frailty_variance	Dependence Measures and Theoretical Frailty Variance

-- G --

generate_powerset

Generate Power Set of Components

-- H --

hpd_interval

Highest Posterior Density (HPD) Credible Interval

-- I --

insulin_gdm

Time to Insulin Initiation in Gestational Diabetes Mellitus Dataset

-- K --

kendall_tau	Dependence Measures and Theoretical Frailty Variance
kendall_tau_rhr	Kendall's Tau Measure of Dependence
kidney_bivariate	Kidney Infection Recurrence Bivariate Survival Data
kidney_frailty	Kidney Infection Recurrence Data
kidney_infection	Kidney Infection Bivariate Survival Dataset

-- L --

laplace_frailty	Laplace Transform of Frailty Distributions
logLik.frailty_bayes	Model Extraction Methods
logLik.oneshot_kofm	Extract Model Log-Likelihood
logLik.ziprom_fit	Methods for ziprom_fit Objects
loglik_add_frailty	Bivariate Survival Log-Likelihood for Additive Shared Frailty Models
loglik_biv_rhr	Bivariate Left-Censored Log-Likelihood under Reversed Hazard Rate
loglik_oneshot	Log-Likelihood Function for One-Shot Devices
lpml	Log Pseudo Marginal Likelihood (LPML)

-- M --

mice_tumor	ED01 Mice Tumor Toxicological Data
mttf_k_out_of_m	Mean Time to Failure (MTTF) for k-out-of-M Systems
mttf_k_out_of_m.oneshot_frailty	Mean Time to Failure (MTTF) for k-out-of-M Systems
mttf_k_out_of_m.oneshot_kofm	Mean Lifetime and Confidence Intervals for k-Out-of-M Systems

-- O --

oneshot_frailty	Fit Shared Gamma Frailty Model for One-Shot Device Testing Data
oneshot_kofm	Fit Shared Gamma Frailty Model for k-Out-of-M One-Shot Devices

-- P --

plot.add_frailty	Diagnostic and Visualization Plots for Additive Shared Frailty Models
plot.frailty_bayes	S3 Plot Method for Bayesian Frailty Models
plot.oneshot_frailty	Diagnostic and Reliability Plots for One-Shot Device Testing
plot.oneshot_kofm	Diagnostic and Visual Plots for One-Shot Frailty Models
plot.rhr_bayes_fit	Plot Diagnostics for Bayesian Shared RHR Frailty Model
plot.rhr_mle_fit	Plot Diagnostics for Maximum Likelihood Shared RHR Frailty Model
plot.ziprom_fit	Plot Diagnostics and Survival Curves for ziprom_fit Objects
plot_activation_compare	Compare Survival Curves Across Activation Schemes
plot_forecast	Plot Diagnostics and Survival Curves for ziprom_fit Objects
plot_quantile_residuals	Plot Diagnostics and Survival Curves for ziprom_fit Objects
plot_survival_fit	Plot Diagnostics and Survival Curves for ziprom_fit Objects
predict.frailty_bayes	Predict Method for Frailty Models
predict.oneshot_kofm	Predict System Reliability or Hazard Rates
predict.ziprom_fit	Prediction and Multi-Level Significance Forecasting for ziprom_fit Models
print.frailty_bayes	Print Methods for Frailty Models
print.oneshot_kofm	Print Method for One-Shot Frailty Model Fits
print.summary.oneshot_kofm	Print Summary for One-Shot Frailty Model Fits
print.summary.ziprom_fit	Methods for ziprom_fit Objects
print.ziprom_fit	Methods for ziprom_fit Objects
p_rhr_baseline	Baseline Cumulative Distribution Function under Reversed Hazard Rate

-- Q --

quantile_proper	Quantile Function for Susceptible Group
q_rhr_baseline	Baseline Quantile Function under Reversed Hazard Rate

-- R --

reliability_k_out_of_m	Reliability Evaluation for k-out-of-M Systems
reliability_k_out_of_m.oneshot_frailty	System Reliability for k-out-of-M Systems under Gamma Frailty
reliability_k_out_of_m.oneshot_kofm	Reliability Evaluation for k-Out-of-M Systems
residuals.frailty_bayes	Residuals for Frailty Models
residuals.oneshot_kofm	Extract Pearson Residuals
residuals.ziprom_fit	Methods for ziprom_fit Objects
retinopathy_frailty	Diabetic Retinopathy Study Paired Eye Data
rhr_baseline	Baseline Reversed Hazard Rate Function
rzicr_promotion	Random Sample Generator for Zero-Inflated Promotion Models

-- S --

sim_add_frailty	Simulate Bivariate Survival Data under Additive Shared Frailty Models
sim_biv_rhr_frailty	Simulate Bivariate Left-Censored Survival Data under Shared RHR Frailty
sim_copula	Simulate Dependent Component Lifetimes via Clayton Copula
sim_corrFrailty	Simulate Bivariate Survival Data with Correlated Frailty
sim_data4	Simulated One-Shot Device Test Data with 4 Failure Modes
sim_frailty	Simulate Frailty Survival Data or One-Shot Device Lifetimes
sim_oneshot	Simulate One-Shot Device Testing Datasets
sim_oneshot_frailty	Simulate One-Shot Device Lifetimes under Shared Gamma Frailty
sim_oneshot_frailty_lifetimes	Simulate Dependent Component Lifetimes via Gamma Frailty
sim_ziprom	Simulate Data from Zero-Inflated Promotion Cure-Rate Models
summary.frailty_bayes	Summary Method for Bayesian Frailty Models
summary.frailty_mle	Summary Method for MLE Frailty Models
summary.oneshot_kofm	Summary Method for One-Shot Frailty Model Fits
summary.ziprom_fit	Methods for ziprom_fit Objects
surv_proper	Proper Conditional Survival Function for Susceptible Group

-- T --

test_baseline	Likelihood Ratio Test for Baseline Lifetime Distribution
test_independence	Likelihood Ratio Test for Component Independence

-- V --

var_frailty	Variance of Frailty Distribution
vcov.oneshot_kofm	Extract Variance-Covariance Matrix
vcov.ziprom_fit	Methods for ziprom_fit Objects

-- Z --

ziprom_core_dens	Population Density Function
ziprom_core_surv	Population Survival Function
ziprom_fit	Fit Zero-Inflated Promotion Cure-Rate Models with Frailty
ziprom_loglik	Log-Likelihood Function for Zero-Inflated Promotion Cure-Rate Models
ziprom_residuals	Evaluation Metrics and Residual Diagnostics for Zero-Inflated Promotion Models