Package: MIC
Title: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Version: 1.2.0
Authors@R: 
    person("Alessandro", "Gerada", , "alessandro.gerada@liverpool.ac.uk", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6743-4271"))
Description: Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
    Validate the results of an MIC experiment by comparing observed MIC values to
    a gold standard assay, in line with standards from the International Organization for
    Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from
    whole genome sequence data stored in the Pathosystems Resource Integration Center (2013)
    <doi:10.1093/nar/gkt1099> database or locally.
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews:
Imports: AMR, glue, readr, dplyr, Rcpp, data.table, Biostrings,
        stringr, rlang, tidyr, future.apply, progressr, lemon, ggplot2,
        forcats, purrr, tibble, curl
Depends: R (>= 4.1.0)
LazyData: true
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), xgboost, flextable, caret, lifecycle,
        future
Config/testthat/edition: 3
URL: https://github.com/agerada/MIC
BugReports: https://github.com/agerada/MIC/issues
NeedsCompilation: yes
Packaged: 2025-10-12 13:16:44 UTC; agerada
Author: Alessandro Gerada [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6743-4271>)
Maintainer: Alessandro Gerada <alessandro.gerada@liverpool.ac.uk>
Repository: CRAN
Date/Publication: 2025-10-12 16:40:14 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2025-11-27 22:25:11 UTC; unix
Archs: MIC.so.dSYM
