Package: NAIR
Type: Package
Title: Network Analysis of Immune Repertoire
Version: 1.0.4
Authors@R: c(
    person("Brian", "Neal", email = "Brian.Neal@ucsf.edu", role = c("aut", "cre")),
    person("Hai", "Yang", email = "Hai.Yang@ucsf.edu", role = "aut"),
    person("Daniil", "Matveev", email = "dmatveev@sfsu.edu", role = "aut"),
    person("Phi Long", "Le", email = "PhiLong.Le@ucsf.edu", role = "aut"),
    person("Li", "Zhang", email = "Li.Zhang@ucsf.edu", role = c("cph", "aut")))
Description: Pipelines for studying the adaptive immune repertoire of T cells 
    and B cells via network analysis based on receptor sequence similarity. 
    Relate clinical outcomes to immune repertoires based on their network 
    properties, or to particular clusters and clones within a repertoire. 
    Yang et al. (2023) <doi:10.3389/fimmu.2023.1181825>.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 3.1.0)
Imports: Rcpp (>= 1.0.8), lifecycle, igraph, ggraph, ggplot2,
        grDevices, utils, Matrix, stats, dplyr, rlang
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
LinkingTo: Rcpp, RcppArmadillo (>= 0.10.8.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
URL:
        https://mlizhangx.github.io/Network-Analysis-for-Repertoire-Sequencing-/,
        https://github.com/mlizhangx/Network-Analysis-for-Repertoire-Sequencing-
NeedsCompilation: yes
Packaged: 2024-03-03 00:08:19 UTC; Brian
Author: Brian Neal [aut, cre],
  Hai Yang [aut],
  Daniil Matveev [aut],
  Phi Long Le [aut],
  Li Zhang [cph, aut]
Maintainer: Brian Neal <Brian.Neal@ucsf.edu>
Repository: CRAN
Date/Publication: 2024-03-03 00:52:36 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2025-11-28 03:40:31 UTC; unix
Archs: NAIR.so.dSYM
