%in.region%	in.region2
adjust.coordinates	adjust.coordinates
bed2index	bed2index
bed2vcf	bed2vcf
bedr	bedr
bedr.join.multiple.region	bedr.join.multiple.region
bedr.join.region	bedr.join.region
bedr.merge.region	bedr.merge.region
bedr.plot.region	bedr.plot.region
bedr.setup	bedr.setup
bedr.snm.region	bedr.snm.region
bedr.sort.region	bedr.sort.region
bedr.subtract.region	bedr.subtract.region
catv	catv
check.binary	check.binary
cluster.region	cluster.region
convert2bed	convert2bed
create.tmp.bed.file	create.tmp.bed.file
determine.input	determine.input
df2list	df2list
download.datasets	download.datasets
flank.region	flank.region
get.bedpe.id	get.bedpe.id
get.chr.length	get.chr.length
get.example.regions	get.example.regions
get.fasta	get.fasta
get.random.regions	get.random.regions
get.strand	get.strand
grow.region	grow.region
in.region	in.region
index2bed	index2bed
is.merged.region	is.merged.region
is.sorted.region	is.sorted.region
is.valid.ref	is.valid.ref
is.valid.region	is.valid.region
is.valid.seq	is.valid.seq
jaccard	jaccard
modifyList2	modifyList2
order.region	order.region
permute.region	permute.region
process.input	process.input
query.ucsc	query.ucsc
read.vcf	read.vcf
reldist	reldist
size.region	size.region
strsplit2matrix	strsplit2matrix
tabix	tabix
table2venn	table2venn
test.region.similarity	test.region.similarity
vcf2bed	vcf2bed
vcf2bedpe	vcf2bedpe
write.vcf	write.vcf
