# Epistatic Network Modelling with Forward-Time Simulation

## Documentation for package ‘epinetr’ version 0.96

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.
- Package README

## Help Pages

addEffects | Attach additive effects to population.
attachEpiNet | Attach epistatic network to population.
epinetr | epinetr
geno100snp | Example genotype matrix.
getAddCoefs | Get additive coefficients.
getAddOffset | Retrieve additive offset.
getAlleleFreqRun | Get allele frequencies.
getComponents | Get phenotypic components.
getEpiNet | Epistatic network retrieval.
getEpiOffset | Retrieve epistatic offset.
getEpistasis | Calculate epistatic interactions.
getGeno | Get population unphased genotypes.
getHaplo | Retrieve haplotypes.
getIncMatrix | Incidence matrix retrieval.
getInteraction | Retrieve interaction values.
getPedigree | Get population pedigree.
getPhased | Get population phased genotypes.
getQTL | QTL retrieval.
getSubPop | Get subpopulation
loadGeno | Load epinetr genotype file.
map100snp | Example map.
plot.EpiNet | Plot epistatic network.
plot.Population | Plot phenotypic value for a population.
Population | Population constructor.
print.Population | Print function for population.
rincmat100snp | Example incidence matrix.
runSim | Run simulation on population.