# A Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis

## Documentation for package ‘scPipeline’ version 0.2.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AnnotateCellsWithSingleR | Annotate cells in a Seurat object using SingleR with Celldex
ConvertGeneIdentifiers | Convert Gene Identifiers in a Seurat Object
ReactomeData | Reactome Data Analysis for Seurat Object
SeuratLowDim | Create a Low dimensional Seurat object from scaled seurat object
SeuratMarkers | A thresholded markers list for better calculation of DE genes
SeuratPreprocess | Preprocess count data and create a Seurat object
TransferAnnotations | Transfer annotations to Seurat clusters