Package: tidypopgen
Title: Tidy Population Genetics
Version: 0.4.0
Authors@R: 
    c(person("Evie", "Carter", role = c("aut")),
    person("Eirlys", "Tysall", role = c("aut")),
    person("Andrea", "Manica", email = "am315@cam.ac.uk", 
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-1895-450X")),
    person("Chang", "Christopher", role = c("ctb"),
           comment = "Author of Hardy-Weinberg Equilibrium algorithm in PLINK 1.90, used in loci_hwe()"),
    person("Shaun", "Purcell", role = c("ctb"),
           comment = "Author of Hardy-Weinberg Equilibrium algorithm in PLINK 1.90, used in loci_hwe()"),
    person("Bengtsson", "Henrik", role = c("ctb"),
           comment = "Author of countLines in R.utils, modified for .vcf in count_vcf_variants()"))
Description: We provide a tidy grammar of population genetics, facilitating 
    the manipulation and analysis of data on biallelic single nucleotide
    polymorphisms (SNPs). 'tidypopgen' scales to very large genetic datasets
    by storing genotypes on disk, and performing operations on them in 
    chunks, without ever loading all data in memory. The full
    functionalities of the package are described in Carter et al. (2025)
    <doi:10.1101/2025.06.06.658325>.
License: GPL (>= 3)
Encoding: UTF-8
Language: en-GB
URL: https://github.com/EvolEcolGroup/tidypopgen,
        https://evolecolgroup.github.io/tidypopgen/
BugReports: https://github.com/EvolEcolGroup/tidypopgen/issues
RoxygenNote: 7.3.3
Depends: R (>= 3.5.0), dplyr, tibble
Imports: bigparallelr, bigsnpr, bigstatsr, foreach, generics, ggplot2,
        methods, MASS, patchwork, runner, rlang, sf, stats, tidyselect,
        tidyr, utils, Rcpp, UpSetR, vctrs
Suggests: adegenet, admixtools, broom, data.table, hierfstat, knitr,
        detectRUNS, LEA, RhpcBLASctl, rmarkdown, rnaturalearth,
        rnaturalearthdata, readr, reticulate, testthat (>= 3.0.0),
        vcfR, xgboost, spelling
Additional_repositories: https://evolecolgroup.r-universe.dev/
VignetteBuilder: knitr
Config/testthat/edition: 3
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.600), bigstatsr, rmio
LazyData: true
Config/Needs/website: rmarkdown
NeedsCompilation: yes
Packaged: 2025-10-24 16:02:00 UTC; andrea
Author: Evie Carter [aut],
  Eirlys Tysall [aut],
  Andrea Manica [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-1895-450X>),
  Chang Christopher [ctb] (Author of Hardy-Weinberg Equilibrium algorithm
    in PLINK 1.90, used in loci_hwe()),
  Shaun Purcell [ctb] (Author of Hardy-Weinberg Equilibrium algorithm in
    PLINK 1.90, used in loci_hwe()),
  Bengtsson Henrik [ctb] (Author of countLines in R.utils, modified for
    .vcf in count_vcf_variants())
Maintainer: Andrea Manica <am315@cam.ac.uk>
Repository: CRAN
Date/Publication: 2025-10-24 16:30:03 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2025-11-28 00:40:55 UTC; unix
Archs: tidypopgen.so.dSYM
