Converts 'MultiQC' Reports into Tidy Data Frames


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Documentation for package ‘TidyMultiqc’ version 0.1.0

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TidyMultiqc-package TidyMultiqc: Converting MultiQC reports into tidy data frames
extract_histogram Extractor function that calculates statistics for a histogram.
extract_ignore_x Extractor function that ignores the x-axis and applies statistics over the y-values.
extract_xy Extractor function that extracts the (x, y) pairs in the plot and puts them as columns in a data.frame, with colnames "x" and "y"
load_multiqc Loads one or more MultiQCs report into a data frame
parse_plot_features Returns a list of summary statistics for a plotly plot, provided as a list e.g. from jsonlite.
summary_extract_df Summary function that only works with the 'extract_xy()' extractor. Extracts a single point from the x,y data.frame by first selecting a row and then returning the y value for that row
summary_q30 Summary statistic for finding the %Q30 of a dataset of quality scores This is the proportion of total reads in a dataset that have a quality score of 30 or above.