dictionary.annotate | Set variable annotation with a taxonomy term |
dictionary.annotate.harmo_status | Set variable annotation with Harmonization Status term |
dictionary.annotations | List the annotations |
dictionary.apply | Apply the dictionary to a tibble |
dictionary.inspect | Inspect the dictionary of a tibble |
dsadmin.get_method | Get a DataSHIELD method |
dsadmin.get_methods | Get DataSHIELD methods |
dsadmin.get_options | Get the DataSHIELD options |
dsadmin.installed_package | Check DataSHIELD package |
dsadmin.install_github_package | Install a DataSHIELD package from GitHub |
dsadmin.install_local_package | Install a DataSHIELD package from a local archive file |
dsadmin.install_package | Install a DataSHIELD package |
dsadmin.package_description | Get DataSHIELD package description |
dsadmin.package_descriptions | Get DataSHIELD package descriptions |
dsadmin.perm | Get the DataSHIELD permissions |
dsadmin.perm_add | Add or update a DataSHIELD permission |
dsadmin.perm_delete | Delete a DataSHIELD permission |
dsadmin.remove_package | Remove DataSHIELD package |
dsadmin.rm_method | Remove DataSHIELD method |
dsadmin.rm_methods | Remove DataSHIELD methods. |
dsadmin.rm_option | Remove a DataSHIELD option |
dsadmin.rm_package_methods | Remove DataSHIELD package methods |
dsadmin.set_method | Set DataSHIELD method |
dsadmin.set_option | Set DataSHIELD option |
dsadmin.set_package_methods | Set DataSHIELD package methods |
oadmin.installed_devtools | Check devtools package |
oadmin.installed_package | Check package is installed |
oadmin.installed_packages | List installed packages |
oadmin.install_bioconductor_package | Install a package from Bioconductor |
oadmin.install_devtools | Install devtools package |
oadmin.install_github_package | Install a package from GitHub |
oadmin.install_local_package | Install a package from a local archive file |
oadmin.install_package | Install package |
oadmin.package_description | Get package description |
oadmin.perm | Get the R permissions |
oadmin.perm_add | Add or update a R permission |
oadmin.perm_delete | Delete a R permission |
oadmin.remove_package | Remove package |
opal.annotate | Apply the annotations to a Opal table |
opal.annotations | Get the annotations of a Opal table |
opal.assign | Data or expression assignment |
opal.assign.data | Data assignment |
opal.assign.resource | Resource assignment |
opal.assign.script | R script assignment |
opal.assign.table | Data assignment to a data.frame |
opal.assign.table.tibble | Data assignment to a tibble |
opal.as_md_table | Array to Markdown |
opal.attribute_values | Get a vector of values |
opal.command | Get an asynchronous command |
opal.commands | List the asynchronous commands |
opal.commands_rm | Remove all asynchronous commands |
opal.command_result | Get result of an asynchronous command |
opal.command_rm | Remove an asynchronous command |
opal.datasource | Get a datasource |
opal.datasources | Get datasources |
opal.delete | Generic REST resource deletion. |
opal.execute | Execute a R script |
opal.execute.source | Execute a R file script |
opal.file | Get file content |
opal.file_cp | Copy a file |
opal.file_download | Download a file |
opal.file_ls | List content of a folder |
opal.file_mkdir | Make a folder |
opal.file_mkdir_tmp | Make a temporary folder |
opal.file_mv | Move and/or rename a file |
opal.file_read | Read a file |
opal.file_rm | Remove a file |
opal.file_upload | Upload a file |
opal.file_write | Write a file |
opal.get | Generic REST resource getter. |
opal.load_package | Load package |
opal.login | Opal login |
opal.logout | Logout from Opal(s) |
opal.post | Generic REST resource creation. |
opal.project | Get a project |
opal.projects | Get projects |
opal.project_create | Create a project |
opal.project_delete | Delete a project |
opal.project_exists | Check a project exists |
opal.project_perm | Get the permissions on a project |
opal.project_perm_add | Add or update a permission on a project |
opal.project_perm_delete | Delete a permission from a project |
opal.put | Generic REST resource update. |
opal.report | Opal report |
opal.resource | Get a resource reference of a project |
opal.resources | Get the resource references of a project |
opal.resources_perm | Get the permissions on any resource |
opal.resources_perm_add | Add or update a permission on any resource |
opal.resources_perm_delete | Delete a permission from any resource |
opal.resource_create | Create a resource reference in a project |
opal.resource_delete | Delete a resource reference |
opal.resource_exists | Check a resource reference exists |
opal.resource_extension_create | Create an extended resource reference in a project |
opal.resource_get | Get the resource object of a project |
opal.resource_perm | Get the permissions on a resource |
opal.resource_perm_add | Add or update a permission on a resource |
opal.resource_perm_delete | Delete a permission from a resource |
opal.rm | Remove a R symbol (deprecated) |
opal.sql | Execute a SQL query on tables |
opal.sql_history | SQL query execution history |
opal.symbols | List R symbols |
opal.symbol_import | Import a tibble |
opal.symbol_rm | Remove a R symbol |
opal.symbol_save | Save a tibble |
opal.table | Get a table of a datasource |
opal.tables | Get tables of a datasource |
opal.tables_perm | Get the permissions on any table of a project |
opal.tables_perm_add | Add or update a permission on any table of a project |
opal.tables_perm_delete | Delete a permission from any table of a project |
opal.table_create | Create a Opal table or view |
opal.table_delete | Delete a Opal table |
opal.table_dictionary_get | Get the dictionary of a Opal table |
opal.table_dictionary_update | Update the dictionary of a Opal table |
opal.table_exists | Check a Opal table exists |
opal.table_export | Export a table as a file |
opal.table_get | Get a Opal table as a tibble |
opal.table_import | Import a file as table |
opal.table_perm | Get the permissions on a table |
opal.table_perm_add | Add or update a permission on a table |
opal.table_perm_delete | Delete a permission from a table |
opal.table_save | Save a local tibble as a Opal table |
opal.table_truncate | Truncate a Opal table |
opal.task | Get a task |
opal.tasks | Get the tasks |
opal.task_cancel | Cancel a task |
opal.task_wait | Wait for a task to complete. |
opal.taxonomies | Get taxonomies |
opal.taxonomy | Get a taxonomy |
opal.taxonomy_delete | Delete a taxonomy |
opal.taxonomy_download | Download a taxonomy file |
opal.taxonomy_upload | Upload a taxonomy file |
opal.terms | Get the terms of a vocabulary |
opal.token | Get a personal access token |
opal.tokens | Get the personal access tokens |
opal.token_datashield_create | Create a personal access token for Datashield usage |
opal.token_delete | Delete a personal access token |
opal.token_r_create | Create a personal access token for R usage |
opal.token_sql_create | Create a personal access token for SQL usage |
opal.unload_package | Unload package |
opal.valueset | Get the values of an entity |
opal.variable | Get a variable of a table |
opal.variables | Get variables of a table |
opal.version_compare | Compare |
opal.vocabularies | Get the vocabularies of a taxonomy |
opal.vocabulary | Get a taxonomy vocabulary |
opal.workspaces | Get the R workspaces from a opal. |
opal.workspace_rm | Remove a R workspace from a opal. |
opal.workspace_save | Save the current session in a opal R workspace. |