Merge-Split Samplers for Conjugate Bayesian Nonparametric Models

Documentation for package ‘sams’ version 0.4.0

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asCanonical	Coerce a Vector of Cluster Labels to Canonical Form
asClusterLabels	Coerce a Set Partition in List Structure to Numeric Vectors of Cluster Label
asSetPartition	Coerce a Set Partition as Numeric Vectors of Cluster Labels to a List Structure
clusterProportions	Compute the Proportion of Items in Each Cluster for All Partitions
clusterTrace	Plot Traces of Cluster Sizes
clusterWithItem	Identify Which Cluster Contains a Given Item
createNewCluster	Create a New Cluster with Given Item
dCRP	Compute Probability Mass of a Partition Under the Two Parameter Chinese Restaurant Process (CRP)
getThetas	Get theta Parameters from a Numeric Vector of Cluster Labels and Unique phi Values
isCanonical	Check if a Vector of Cluster Labels is in Canonical Form
joinExistingCluster	Join Item to an Existing Cluster
nClusters	Count the Number of Clusters in a Set Partition
nealAlgorithm3	Conjugate Gibbs Sampler for a Partition
partitionEntropy	Calculate the Entropy of a Set Partition
poch	Compute the Pochhammer Symbol (Rising Factorials) With Increment
psm	Compute the Posterior Pairwise Similarity for All Pairs of Items
psmMergeSplit	Merge-Split Sampling for a Partition Based on Sequential Allocation Informed by Pairwise Similarities
psmMergeSplit_base	Base Functionality for the psmMergeSplit Function
restrictedGibbsMergeSplit	Merge-Split Sampling for a Partition Based on Restricted Gibbs Scans
seqAllocatedMergeSplit	Merge-split Sampling for a Partition Based on Sequential Allocation of Items
seqAllocatedMergeSplit_base	Base Functionality for the seqAllocatedMergeSplit Function
simpleMergeSplit	Merge-Split Sampling for a Partition Using Uniformly Random Allocation
sizeOfLargestCluster	Calculate the Number of Items in the Largest Cluster of a Set Partition
transformedWeights	Enumerate Transformed Weights for Choosing i and j Non-Uniformly