add_annotation | add_annotation |
add_attr | Add attribute to abject |
add_bar | Adds a bar annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
add_bar-method | add_bar |
add_class | Add class to abject |
add_line | Adds a line annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
add_line-method | add_line |
add_point | Adds a point annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
add_point-method | Adds a point annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
add_tile | Adds a tile annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
add_tile-method | Adds a tile annotation layer to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
annot_to_list | annot_to_list |
as_matrix | Get matrix from tibble |
check_if_counts_is_na | Check whether there are NA counts |
check_if_duplicated_genes | Check whether there are duplicated genes/transcripts |
check_if_wrong_input | Check whether there are NA counts |
drop_class | Remove class to abject |
error_if_log_transformed | Check whether a numeric vector has been log transformed |
get_abundance_norm_if_exists | Get column names either from user or from attributes |
get_elements | Get column names either from user or from attributes |
get_elements_features | Get column names either from user or from attributes |
get_elements_features_abundance | Get column names either from user or from attributes |
get_sample_counts | Get column names either from user or from attributes |
get_sample_transcript | Get column names either from user or from attributes |
get_sample_transcript_counts | Get column names either from user or from attributes |
get_x_y_annotation_columns | get_x_y_annotation_columns |
heatmap | Creates a 'InputHeatmap' object from 'tbl_df' on evaluation creates a 'ComplexHeatmap' |
heatmap-method | Creates a 'InputHeatmap' object from 'tbl_df' on evaluation creates a 'ComplexHeatmap' |
heatmap_ | Creates a 'InputHeatmap' object from 'tbl_df' on evaluation creates a 'ComplexHeatmap' |
ifelse2_pipe | This is a generalisation of ifelse that accepts an object and return an objects |
ifelse_pipe | This is a generalisation of ifelse that accepts an object and return an objects |
input_heatmap | input_heatmap |
layer_symbol | Adds a layers of symbols above the heatmap tiles to a 'InputHeatmap', that on evaluation creates a 'ComplexHeatmap' |
layer_symbol-method | layer_symbol |
N52 | Example data set N52 |
parse_formula | .formula parser |
pasilla | Example data set Pasilla |
prepend | From rlang deprecated |
quo_names | Convert array of quosure (e.g. c(col_a, col_b)) into character vector |
save_pdf | Save plot on PDF file |
save_pdf-method | save_pdf |
save_pdf-method | save_pdf |
scale_design | Scale design matrix |
scale_robust | Scale counts in a robust way against sd == 0 |
select_closest_pairs | Sub function of remove_redundancy_elements_though_reduced_dimensions |