Handling Vegetation Data Sets


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Documentation for package ‘vegtable’ version 0.1.6

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$ Select or replace elements in objects
$-method Select or replace elements in objects
$<- Select or replace elements in objects
$<--method Select or replace elements in objects
add_releves Merge relevés from data frames into vegtable objects
add_releves-method Merge relevés from data frames into vegtable objects
aggregate Aggregating information into a data frame
aggregate-method Aggregating information into a data frame
as.list Coerce an S4 object to a list
as.list-method Coerce an S4 object to a list
aspect_conv Conversion of aspect classes to azimuth
aspect_conv-data Conversion of aspect classes to azimuth
braun_blanquet Conversion of Braun-Blanquet codes to cover percentage Cover values conversion as coverconvert object. Object of class coverconvert contains conversion tables usually from a categorical variable (a cover scale) to a numerical one (equivalent percentage cover value). Cover values are stored as range for each level in the scale (minimum and maximum cover value).
braun_blanquet-data Conversion of Braun-Blanquet codes to cover percentage Cover values conversion as coverconvert object. Object of class coverconvert contains conversion tables usually from a categorical variable (a cover scale) to a numerical one (equivalent percentage cover value). Cover values are stored as range for each level in the scale (minimum and maximum cover value).
clean Clean orphaned records in vegtable object
clean-method Clean orphaned records in vegtable object
clean_once Clean orphaned records in vegtable object
count_taxa Count taxa included in vegtable objects
count_taxa-method Count taxa included in vegtable objects
coverconvert Cover conversion tables
coverconvert-class Cover conversion tables
cross2db Generating cross tables from database lists
crosstable Generating cross tables from database lists
crosstable-method Generating cross tables from database lists
df2vegtable Convert a data frame into a vegtable object.
df2vegtable-method Convert a data frame into a vegtable object.
dimnames Retrieve names of vegtable and coverconvert objects
dimnames-method Retrieve names of vegtable and coverconvert objects
dune_veg Dutch dune meadows as vegtable Data set from the package vegan::vegan, converted to a vegtable object.
dune_veg-data Dutch dune meadows as vegtable Data set from the package vegan::vegan, converted to a vegtable object.
Extract Select or replace elements in objects
header Retrieve or replace slot header in vegtable objects
header-method Retrieve or replace slot header in vegtable objects
header<- Retrieve or replace slot header in vegtable objects
header<--method Retrieve or replace slot header in vegtable objects
Kenya_veg Vegetation-plots from Kenya
Kenya_veg-data Vegetation-plots from Kenya
layers2samples Add information from slot 'layers' into slot 'samples'
layers2samples-method Add information from slot 'layers' into slot 'samples'
make_cocktail Produce a Cocktail classification
make_cocktail-method Produce a Cocktail classification
match_names Search matchings between character and taxlist objects.
match_names-method Search matchings between character and taxlist objects.
merge_taxa Merge concepts
merge_taxa-method Merge concepts
names Retrieve names of vegtable and coverconvert objects
names-method Retrieve names of vegtable and coverconvert objects
names<- Retrieve names of vegtable and coverconvert objects
names<--method Retrieve names of vegtable and coverconvert objects
read_juice Exporting tables for Juice
relation2header Retrieve or replace relations in vegtable objects
relation2header-method Retrieve or replace relations in vegtable objects
set_formula Produce a Cocktail classification
set_formula-method Produce a Cocktail classification
set_group Produce a Cocktail classification
set_group-method Produce a Cocktail classification
set_pseudo Produce a Cocktail classification
set_pseudo-method Produce a Cocktail classification
shaker Class containing Cocktail algorithms.
shaker-class Class containing Cocktail algorithms.
subset Subset functions for vegtable objects
subset-method Subset functions for vegtable objects
summary Summary method for vegtable objects
summary-method Summary method for vegtable objects
taxa2samples Merge concepts
taxa2samples-method Merge concepts
trait_proportion Statistics and proportion for taxon traits
trait_proportion-method Statistics and proportion for taxon traits
trait_stats Statistics and proportion for taxon traits
trait_stats-method Statistics and proportion for taxon traits
transform Convert cover scales to percent cover
transform-method Convert cover scales to percent cover
tv2coverconvert Import of vegetation data from Turboveg databases
tv2vegtable Import of vegetation data from Turboveg databases
used_synonyms Retrieve synonyms used in the data set
used_synonyms-method Retrieve synonyms used in the data set
vegtable Class vegtable.
vegtable-class Class vegtable.
vegtable2kml Mapping of plot observations
vegtable2kml-method Mapping of plot observations
vegtable_stat General statistics from vegtable objects
veg_relation Retrieve or replace relations in vegtable objects
veg_relation-method Retrieve or replace relations in vegtable objects
veg_relation<- Retrieve or replace relations in vegtable objects
veg_relation<--method Retrieve or replace relations in vegtable objects
Wetlands Vegetation-plots from Tanzania
Wetlands-data Vegetation-plots from Tanzania
Wetlands_veg Vegetation-plots from Tanzania
write_juice Exporting tables for Juice
write_juice-method Exporting tables for Juice
[ Select or replace elements in objects
[-method Select or replace elements in objects
[<- Select or replace elements in objects
[<--method Select or replace elements in objects