| A.mat | Additive relationship matrix |
| add.diallel.vars | add.diallel.vars |
| adjBeta | Adjusting fixed effects for intercept |
| Ad_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014) |
| Af_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014) |
| atcg1234 | Letter to number converter |
| A_example | Broad sense heritability calculation. |
| A_gryphon | Gryphon data from the Journal of Animal Ecology |
| A_ige | Data to fit indirect genetic effects. |
| bbasis | Function for creating B-spline basis functions (Eilers & Marx, 2010) |
| build.HMM | Build a hybrid marker matrix using parental genotypes from inbred individuals |
| DTi_cornhybrids | Corn crosses and markers |
| DT_augment | DT_augment design example. |
| DT_btdata | Blue Tit Data for a Quantitative Genetic Experiment |
| DT_cornhybrids | Corn crosses and markers |
| DT_cpdata | Genotypic and Phenotypic data for a CP population |
| DT_example | Broad sense heritability calculation. |
| DT_expdesigns | Data for different experimental designs |
| DT_fulldiallel | Full diallel data for corn hybrids |
| DT_gryphon | Gryphon data from the Journal of Animal Ecology |
| DT_h2 | Broad sense heritability calculation. |
| DT_halfdiallel | half diallel data for corn hybrids |
| DT_ige | Data to fit indirect genetic effects. |
| DT_legendre | Simulated data for random regression |
| DT_mohring | Full diallel data for corn hybrids |
| DT_polyploid | Genotypic and Phenotypic data for a potato polyploid population |
| DT_rice | Rice lines dataset |
| DT_sleepstudy | Reaction times in a sleep deprivation study |
| DT_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014) |
| DT_wheat | wheat lines dataset |
| DT_yatesoats | Yield of oats in a split-block experiment |
| fillData | Filling gaps for a dataset to balance |
| fitted-method | Relationship-based mixed-effects model fits |
| getMME | Build the mixed model equations from a lmebreed object |
| GTn_rice | Rice lines dataset |
| GT_cornhybrids | Corn crosses and markers |
| GT_cpdata | Genotypic and Phenotypic data for a CP population |
| GT_polyploid | Genotypic and Phenotypic data for a potato polyploid population |
| GT_rice | Rice lines dataset |
| GT_wheat | wheat lines dataset |
| imputev | Imputing a numeric or character vector |
| leg | Legendre polynomial matrix |
| lme4breeding | *L*inear *m*ixed *e*quations *4* *B*reeding |
| lmebreed | Fit mixed-effects models incorporating relationships |
| lmebreed-class | Relationship-based mixed-effects model fits |
| Md_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014) |
| Mf_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014) |
| MP_cpdata | Genotypic and Phenotypic data for a CP population |
| MP_polyploid | Genotypic and Phenotypic data for a potato polyploid population |
| overlay | Overlay Matrix |
| P_gryphon | Gryphon data from the Journal of Animal Ecology |
| ranef-method | Relationship-based mixed-effects model fits |
| redmm | Reduced Model Matrix |
| residuals-method | Relationship-based mixed-effects model fits |
| rrm | reduced rank matrix |
| simage | Image of sparsity between two variables |
| smm | sparse model matrix |
| stackTrait | Stacking traits in a dataset |
| tps | Get Tensor Product Spline Mixed Model Incidence Matrices |
| umat | Rotation matrix UDU' decomposition |