Brain Atlas Data Structures for the 'ggseg' Ecosystem

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Documentation for package ‘ggseg.formats’ version 0.0.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

aseg	FreeSurfer Automatic Subcortical Segmentation Atlas
as_brain_atlas	Coerce to ggseg atlas
as_ggseg_atlas	Coerce to ggseg atlas
atlas_core_add	Manipulate brain atlas regions and views
atlas_labels	Extract unique labels from an atlas
atlas_manipulation	Manipulate brain atlas regions and views
atlas_meshes	Get atlas meshes for 3D rendering
atlas_palette	Get atlas palette
atlas_regions	Extract unique region names from an atlas
atlas_region_contextual	Manipulate brain atlas regions and views
atlas_region_keep	Manipulate brain atlas regions and views
atlas_region_remove	Manipulate brain atlas regions and views
atlas_region_rename	Manipulate brain atlas regions and views
atlas_sf	Get atlas data for 2D rendering
atlas_type	Detect atlas type
atlas_vertices	Get atlas vertices for 3D rendering
atlas_views	Get available views in atlas
atlas_view_gather	Manipulate brain atlas regions and views
atlas_view_keep	Manipulate brain atlas regions and views
atlas_view_remove	Manipulate brain atlas regions and views
atlas_view_remove_region	Manipulate brain atlas regions and views
atlas_view_remove_small	Manipulate brain atlas regions and views
atlas_view_reorder	Manipulate brain atlas regions and views
brain_atlas	Constructor for ggseg atlas
brain_data_cortical	Create cortical atlas data
brain_data_subcortical	Create subcortical atlas data
brain_data_tract	Create tract atlas data
brain_labels	Extract unique labels from an atlas
brain_regions	Extract unique region names from an atlas
brain_views	Get available views in atlas
convert_legacy_brain_atlas	Convert legacy ggseg atlases to ggseg_atlas format
dk	Desikan-Killiany Cortical Atlas
get_brain_mesh	Get brain surface mesh
ggseg_atlas	Constructor for ggseg atlas
ggseg_data_cortical	Create cortical atlas data
ggseg_data_subcortical	Create subcortical atlas data
ggseg_data_tract	Create tract atlas data
is_brain_atlas	Check ggseg atlas class
is_cortical_atlas	Check ggseg atlas class
is_ggseg3d_atlas	Check if object is a legacy ggseg3d atlas
is_ggseg_atlas	Check ggseg atlas class
is_subcortical_atlas	Check ggseg atlas class
is_tract_atlas	Check ggseg atlas class
read_atlas_files	Read in atlas data from all subjects
read_freesurfer_stats	Read in raw FreeSurfer stats file
read_freesurfer_table	Read in stats table from FreeSurfer
tracula	TRACULA White Matter Tract Atlas
unify_legacy_atlases	Convert legacy ggseg atlases to ggseg_atlas format