# Generated by roxygen2: do not edit by hand

export(CAESAR.CTDEP)
export(CAESAR.RUV)
export(CAESAR.annotation)
export(CAESAR.coembedding)
export(CAESAR.coembedding.image)
export(CAESAR.enrich.pathway)
export(CAESAR.enrich.score)
export(Cauchy.Combination)
export(CoUMAP)
export(CoUMAP.plot)
export(Intsg)
export(SigScore)
export(acc)
export(add.gene.embedding)
export(annotation_mat)
export(auc)
export(cellembedding_matrix)
export(cellembedding_seurat)
export(find.sig.genes)
export(getneighborhood_fastcpp)
export(marker.select)
export(markerList2mat)
import(Rcpp)
importFrom(DescTools,AUC)
importFrom(Matrix,as.matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(ProFAST,AddAdj)
importFrom(ProFAST,FAST_run)
importFrom(ProFAST,pdistance)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,Assays)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,Loadings)
importFrom(Seurat,SetAssayData)
importFrom(Seurat,VariableFeatures)
importFrom(ade4,mstree)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(future,multicore)
importFrom(future,plan)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,hcl)
importFrom(irlba,irlba)
importFrom(methods,is)
importFrom(pbapply,pblapply)
importFrom(pbapply,pbsapply)
importFrom(progress,progress_bar)
importFrom(scater,calculateUMAP)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix.lm)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,wilcox.test)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
useDynLib(CAESAR.Suite, .registration = TRUE)
