Package: CIDER
Type: Package
Title: Meta-Clustering for scRNA-Seq Integration and Evaluation
Version: 0.99.4
Maintainer: Zhiyuan Hu <zhiyuan.cheryl.hu@gmail.com>
Authors@R: c(
    person("Zhiyuan", "Hu", role = c("aut", "cre"),
      email = "zhiyuan.cheryl.hu@gmail.com",
      comment = c(ORCID = "0000-0002-1688-6032")
    ),
    person("Christopher", "Yau", 
      role = "aut",
      comment = c(ORCID = "0000-0001-7615-8523")
    ),
    person("Ahmed", "Ahmed", 
      role = "aut"
    )
  )
Description: A workflow of (a) meta-clustering based on 
    inter-group similarity measures and (b) a ground-truth-free test metric to 
    assess the biological correctness of integration in real datasets. See Hu Z,
    Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for
    more details.
URL: https://github.com/zhiyuan-hu-lab/CIDER,
        https://zhiyuan-hu-lab.github.io/CIDER/
BugReports: https://github.com/zhiyuan-hu-lab/CIDER/issues
Imports: limma (>= 3.42.0), edgeR (>= 3.28.0), stats (>= 3.6.2),
        foreach (>= 1.4.7), Seurat (>= 3.1.0), utils (>= 3.6.2),
        pheatmap (>= 1.0.0), dbscan (>= 1.1-5), kernlab (>= 0.9-29),
        doParallel, igraph, parallel, graphics, ggplot2, viridis
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), statmod (>= 1.2.2),
        cowplot
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-02-06 16:58:52 UTC; zhiyuanhu
Author: Zhiyuan Hu [aut, cre] (<https://orcid.org/0000-0002-1688-6032>),
  Christopher Yau [aut] (<https://orcid.org/0000-0001-7615-8523>),
  Ahmed Ahmed [aut]
Repository: CRAN
Date/Publication: 2025-02-07 09:50:14 UTC
Built: R 4.6.0; ; 2025-07-01 03:13:44 UTC; windows
