# Fast Likelihood Calculation for Phylogenetic Comparative Models

## Documentation for package ‘PCMBaseCpp’ version 0.1.11

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

benchmarkData | Data for performing a benchmark
benchmarkResults | Results from running a performance benchmark on a personal computer including the time for parameter transformation
benchmarkResultsNoTransform | Results from running a performance benchmark on a personal computer excluding the time for parameter transformation
BenchmarkRvsCpp | A log-likelihood calculation time comparison for different numbers of traits and option-sets
MiniBenchmarkRvsCpp | Evaluate the likelihood calculation times for example trees and data
PCListInt | Converts the logical matrix pc into a list of vectors denoting the (0-based) TRUE-indices in each column
PCMBaseCppIsADevRelease | Check if the PCMBaseCpp version correpsonds to a dev release
PCMInfoCpp | A S3 generic for creating C++ backend objects given a model, data and a tree.
PCMParamGetFullVector | Get a vector with all model parameters unrolled
PCMTreePreorderCpp | Fast preorder of the edges in a tree