Package: SCIntRuler
Type: Package
Title: Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets
Version: 0.99.6
Authors@R: 
    person(given = "Yue", family = "Lyu", email = "yuelyu0521@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8912-6624"))
Maintainer: Yue Lyu <yuelyu0521@gmail.com>
Description: The accumulation of single-cell RNA-seq ('scRNA-seq') studies highlights the potential benefits of integrating multiple datasets. By augmenting sample sizes and enhancing analytical robustness, integration can lead to more insightful biological conclusions. However, challenges arise due to the inherent diversity and batch discrepancies within and across studies. 'SCIntRuler', a novel R package, addresses these challenges by guiding the integration of multiple 'scRNA-seq' datasets.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.0
Imports: Rcpp, Matrix, batchelor, base, Seurat, SeuratObject,
        MatrixGenerics, SingleCellExperiment, SummarizedExperiment,
        dplyr, coin, harmony, ggplot2, gridExtra, cowplot, magrittr,
        stats
LinkingTo: Rcpp
URL: https://github.com/yuelyu21/SCIntRuler,
        https://yuelyu21.github.io/SCIntRuler/
BugReports: https://github.com/yuelyu21/SCIntRuler/issues
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
LazyData: true
LazyDataCompression: xz
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2024-07-11 06:55:10 UTC; a98455
Author: Yue Lyu [aut, cre] (<https://orcid.org/0000-0002-8912-6624>)
Repository: CRAN
Date/Publication: 2024-07-12 15:20:08 UTC
Built: R 4.6.0; x86_64-w64-mingw32; 2025-07-01 03:21:12 UTC; windows
Archs: x64
