Package: SCORPION
Type: Package
Title: Single Cell Oriented Reconstruction of PANDA Individual
        Optimized Networks
Version: 1.3.1
Authors@R: c(person("Daniel","Osorio", email = "daniecos@uio.no", role = c("aut","cre"), comment = c(ORCID = "0000-0003-4424-8422")),
  person("Marieke L.","Kuijjer", email = "marieke.kuijjer@ncmbm.uio.no", role = c("aut"), comment = c(ORCID = "0000-0001-6280-3130")))
Description: Constructs cell-type–specific gene regulatory networks from single-cell RNA-sequencing data. The method implements the SCORPION algorithm, which first aggregates individual cells into supercells and then applies PANDA (Passing Attributes between Networks for Data Assimilation) to infer transcription factor–target regulatory relationships. It also provides statistical methods for differential edge analysis.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr
Suggests: RhpcBLASctl, testthat
URL: https://github.com/kuijjerlab/SCORPION
BugReports: https://github.com/kuijjerlab/SCORPION/issues
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-02-11 14:52:22 UTC; dcosorioh
Author: Daniel Osorio [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4424-8422>),
  Marieke L. Kuijjer [aut] (ORCID:
    <https://orcid.org/0000-0001-6280-3130>)
Maintainer: Daniel Osorio <daniecos@uio.no>
Repository: CRAN
Date/Publication: 2026-02-12 10:10:08 UTC
Built: R 4.6.0; ; 2026-03-07 04:41:31 UTC; windows
