Package: apLCMS
Title: Adaptive Processing of LC-MS Data
Version: 6.8.3
Date: 2025-07-30
Authors@R: person(given = "Tianwei",
                  family = "Yu",
                  email = "yutianwei@cuhk.edu.cn",
                  role = c("aut", "cre"))
Description: Provides methods for the processing of liquid chromatography-mass spectrometry (LC/MS) based metabolomics data, including adaptive tolerance level searching, non-parametric intensity grouping, the use of run filter to preserve weak signals, model-based estimation of peak intensities, and peak detection based on existing knowledge. Related references include Yu et al. (2009) <doi:10.1093/bioinformatics/btp291>, Liu et al. (2020) <doi:10.1038/s41598-020-70850-0>, Yu et al. (2014) <doi:10.1093/bioinformatics/btu430>, Yu et al. (2013) <doi:10.1021/pr301053d>.
Depends: R (>= 2.10), foreach, iterators, ROCR, Rcpp, doParallel
Imports: rgl, mzR, e1071, gbm, randomForest, MASS, splines, ROCS
Suggests: msdata
biocViews: Technology, MassSpectrometry
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2025-07-31 00:56:58 UTC; 123
LinkingTo: Rcpp
Author: Tianwei Yu [aut, cre]
Maintainer: Tianwei Yu <yutianwei@cuhk.edu.cn>
Repository: CRAN
Date/Publication: 2025-08-19 14:30:08 UTC
Built: R 4.6.0; x86_64-w64-mingw32; 2025-08-31 02:47:26 UTC; windows
Archs: x64
