cograph-package	cograph-package
.add_cluster_borders	dot-add_cluster_borders
.add_cluster_labels	dot-add_cluster_labels
.add_heatmap_values	dot-add_heatmap_values
.as_mcml	dot-as_mcml
.auto_detect_clusters	dot-auto_detect_clusters
.build_cluster_lookup	dot-build_cluster_lookup
.build_from_transitions	dot-build_from_transitions
.build_heatmap_base	dot-build_heatmap_base
.build_mcml_edgelist	dot-build_mcml_edgelist
.build_mcml_sequence	dot-build_mcml_sequence
.build_ml_cells	dot-build_ml_cells
.build_ml_connections	dot-build_ml_connections
.build_ml_labels	dot-build_ml_labels
.build_ml_shells	dot-build_ml_shells
.compute_modularity	dot-compute_modularity
.create_cograph_network	dot-create_cograph_network
.decode_tna_data	dot-decode_tna_data
.detect_mcml_input	dot-detect_mcml_input
.disparity_filter_matrix	dot-disparity_filter_matrix
.draw_intra_arc	dot-draw_intra_arc
.draw_intra_group_edges	dot-draw_intra_group_edges
.extract_inits	dot-extract_inits
.extract_ml_layers	dot-extract_ml_layers
.extract_weights	dot-extract_weights
.group_tna_to_mcml	dot-group_tna_to_mcml
.heatmap_theme	dot-heatmap_theme
.matrix_to_long	dot-matrix_to_long
.normalize_clusters	dot-normalize_clusters
.plot_compare_all_pairs	dot-plot_compare_all_pairs
.plot_heatmap_clustered	dot-plot_heatmap_clustered
.plot_heatmap_group_tna	dot-plot_heatmap_group_tna
.plot_heatmap_single	dot-plot_heatmap_single
.process_weights	dot-process_weights
.resolve_colors	dot-resolve_colors
.resolve_ml_colors	dot-resolve_ml_colors
.resolve_weights	dot-resolve_weights
.tna_style_defaults	dot-tna_style_defaults
.transform_to_plane	dot-transform_to_plane
.translate_qgraph_dots	dot-translate_qgraph_dots
.wrap_communities	dot-wrap_communities
abbrev_label	abbrev_label
aes-edges	aes-edges
aes-nodes	aes-nodes
aes-scales	aes-scales
aggregate_duplicate_edges	aggregate_duplicate_edges
aggregate_layers	aggregate_layers
aggregate_weights	aggregate_weights
ai_coding	hai_datasets
ai_detailed	hai_datasets
arrow_base_midpoint	arrow_base_midpoint
arrow_head_points	arrow_head_points
arrow_points	arrow_points
arrow_radius	arrow_radius
as_cograph	as_cograph
as_mcml	as_mcml
as_mcml.cluster_summary	as_mcml
as_mcml.default	as_mcml
as_mcml.group_tna	as_mcml
as_mcml.mcml	as_mcml
as_tna	as_tna
as_tna.cluster_summary	as_tna
as_tna.default	as_tna
as_tna.mcml	as_tna
atan2_usr	atan2_usr
bezier_points	bezier_points
brain_vertices	brain_vertices
build_edge_labels_from_template	build_edge_labels_from_template
build_mcml	build_mcml
centrality	centrality
centrality_alpha	centrality_alpha
centrality_authority	centrality_authority
centrality_betweenness	centrality_betweenness
centrality_closeness	centrality_closeness
centrality_constraint	centrality_constraint
centrality_coreness	centrality_coreness
centrality_current_flow_betweenness	centrality_current_flow_betweenness
centrality_current_flow_closeness	centrality_current_flow_closeness
centrality_degree	centrality_degree
centrality_diffusion	centrality_diffusion
centrality_eccentricity	centrality_eccentricity
centrality_eigenvector	centrality_eigenvector
centrality_harmonic	centrality_harmonic
centrality_hub	centrality_authority
centrality_incloseness	centrality_closeness
centrality_indegree	centrality_degree
centrality_ineccentricity	centrality_eccentricity
centrality_inharmonic	centrality_harmonic
centrality_instrength	centrality_strength
centrality_kreach	centrality_kreach
centrality_laplacian	centrality_laplacian
centrality_leverage	centrality_leverage
centrality_load	centrality_load
centrality_outcloseness	centrality_closeness
centrality_outdegree	centrality_degree
centrality_outeccentricity	centrality_eccentricity
centrality_outharmonic	centrality_harmonic
centrality_outstrength	centrality_strength
centrality_pagerank	centrality_pagerank
centrality_percolation	centrality_percolation
centrality_power	centrality_power
centrality_strength	centrality_strength
centrality_subgraph	centrality_subgraph
centrality_transitivity	centrality_transitivity
centrality_voterank	centrality_voterank
cent_to_edge	cent_to_edge
check_duplicate_edges	check_duplicate_edges
circle_vertices	circle_vertices
cloud_vertices	cloud_vertices
cluster_network	summarize_network
cluster_quality	cluster_quality
cluster_significance	cluster_significance
cluster_summary	cluster_summary
cnet	summarize_network
coding	hai_datasets
coding_detailed	hai_datasets
cograph	cograph
cograph-main	cograph-main
CographLayout	CographLayout
CographNetwork	CographNetwork
CographTheme	CographTheme
COGRAPH_SCALE	COGRAPH_SCALE
COGRAPH_SCALE_LEGACY	COGRAPH_SCALE_LEGACY
color_communities	color_communities
communities	communities
community_consensus	community_consensus
community_edge_betweenness	community_edge_betweenness
community_fast_greedy	community_fast_greedy
community_fluid	community_fluid
community_infomap	community_infomap
community_label_propagation	community_label_propagation
community_leading_eigenvector	community_leading_eigenvector
community_leiden	community_leiden
community_louvain	community_louvain
community_optimal	community_optimal
community_sizes	community_sizes
community_spinglass	community_spinglass
community_walktrap	community_walktrap
compare_communities	compare_communities
compute_adaptive_esize	compute_adaptive_esize
compute_circular_layout	compute_circular_layout
compute_connectivity_jitter_horizontal	compute_connectivity_jitter_horizontal
compute_connectivity_jitter_vertical	compute_connectivity_jitter_vertical
compute_edge_curvatures	compute_edge_curvatures
compute_layout_gephi_fr	compute_layout_gephi_fr
compute_plot_limits	compute_plot_limits
compute_polygon_layout	compute_polygon_layout
com_consensus	community_consensus
com_eb	community_edge_betweenness
com_fg	community_fast_greedy
com_fl	community_fluid
com_im	community_infomap
com_ld	community_leiden
com_le	community_leading_eigenvector
com_lp	community_label_propagation
com_lv	community_louvain
com_op	community_optimal
com_sg	community_spinglass
com_wt	community_walktrap
cqual	cluster_quality
create_edges_df	create_edges_df
create_grid_grob	create_grid_grob
create_nodes_df	create_nodes_df
cross_vertices	cross_vertices
csig	cluster_significance
csum	cluster_summary
curve_control_point	curve_control_point
degree_distribution	degree_distribution
detect_communities	detect_communities
detect_duplicate_edges	detect_duplicate_edges
diamond_vertices	diamond_vertices
disparity	disparity
disparity_filter	disparity_filter
disparity_filter.cograph_network	disparity_filter
disparity_filter.default	disparity_filter
disparity_filter.igraph	disparity_filter
disparity_filter.matrix	disparity_filter
disparity_filter.tna	disparity_filter
draw_arrow_base	draw_arrow_base
draw_brain	draw_brain
draw_chip	draw_chip
draw_chip_node_base	draw_chip_node_base
draw_circle	draw_circle
draw_circle_arrow_base	draw_circle_arrow_base
draw_cloud	draw_cloud
draw_cross	draw_cross
draw_curved_arrow_base	draw_curved_arrow_base
draw_curved_edge	draw_curved_edge
draw_curved_edge_base	draw_curved_edge_base
draw_curve_with_start_segment	draw_curve_with_start_segment
draw_database	draw_database
draw_database_node_base	draw_database_node_base
draw_diamond	draw_diamond
draw_donut	draw_donut
draw_donut_node_base	draw_donut_node_base
draw_donut_pie	draw_donut_pie
draw_donut_pie_node_base	draw_donut_pie_node_base
draw_double_donut_pie	draw_double_donut_pie
draw_double_donut_pie_node_base	draw_double_donut_pie_node_base
draw_edge_label_base	draw_edge_label_base
draw_ellipse	draw_ellipse
draw_gear	draw_gear
draw_heart	draw_heart
draw_hexagon	draw_hexagon
draw_network	draw_network
draw_network_node_base	draw_network_node_base
draw_neural	draw_neural
draw_neural_node_base	draw_neural_node_base
draw_node_base	draw_node_base
draw_node_label_base	draw_node_label_base
draw_open_arrow_base	draw_open_arrow_base
draw_pentagon	draw_pentagon
draw_pie	draw_pie
draw_pie_node_base	draw_pie_node_base
draw_polygon_donut	draw_polygon_donut
draw_polygon_donut_node_base	draw_polygon_donut_node_base
draw_polygon_donut_pie_node_base	draw_polygon_donut_pie_node_base
draw_robot	draw_robot
draw_robot_node_base	draw_robot_node_base
draw_self_loop	draw_self_loop
draw_self_loop_base	draw_self_loop_base
draw_square	draw_square
draw_star	draw_star
draw_straight_edge	draw_straight_edge
draw_straight_edge_base	draw_straight_edge_base
draw_svg_shape	draw_svg_shape
draw_svg_shape_base	draw_svg_shape_base
draw_triangle	draw_triangle
edge_betweenness	edge_centrality
edge_centrality	edge_centrality
edge_endpoint	edge_endpoint
ellipse_vertices	ellipse_vertices
expand_param	expand_param
extract_interlayer	supra_interlayer
extract_layer	supra_layer
extract_motifs	extract_motifs
extract_triads	extract_triads
filter_edges	filter_edges
filter_edges_by_weight	filter_edges_by_weight
filter_nodes	filter_nodes
find_curve_split_index	find_curve_split_index
fontface_to_numeric	fontface_to_numeric
fontface_to_string	fontface_to_string
format_ci_range	format_ci_range
format_edge_label_template	format_edge_label_template
format_pvalue	format_pvalue
from_qgraph	from_qgraph
from_tna	from_tna
gear_vertices	gear_vertices
get_data	get_data
get_donut_base_vertices	get_donut_base_vertices
get_edges	get_edges
get_edge_label_position	get_edge_label_position
get_edge_list	get_edge_list
get_edge_order	get_edge_order
get_groups	get_groups
get_labels	get_labels
get_layout	get_layout
get_meta	get_meta
get_nodes	get_nodes
get_node_order	get_node_order
get_scale_constants	get_scale_constants
get_shape	get_shape
get_shape_vertices	get_shape_vertices
get_significance_stars	get_significance_stars
get_source	get_source
get_svg_shape	get_svg_shape
get_template_from_style	get_template_from_style
get_theme	get_theme
get_x_scale	get_x_scale
get_y_scale	get_y_scale
ggplot_robustness	ggplot_robustness
globals	globals
hai_datasets	hai_datasets
handle_deprecated_param	handle_deprecated_param
heart_vertices	heart_vertices
hexagon_vertices	hexagon_vertices
htna	plot_htna
human_ai	hai_datasets
human_ai_detailed	hai_datasets
init_registries	init_registries
input-edgelist	input-edgelist
input-igraph	input-igraph
input-matrix	input-matrix
input-parse	input-parse
input-qgraph	input-qgraph
input-statnet	input-statnet
input-tna	input-tna
inset_polygon_vertices	inset_polygon_vertices
in_to_usr_x	in_to_usr_x
in_to_usr_y	in_to_usr_y
is_cograph_network	is_cograph_network
is_cograph_theme	is_cograph_theme
is_directed	is_directed
is_symmetric_matrix	is_symmetric_matrix
is_tna_network	is_tna_network
label_abbrev	abbrev_label
lagg	aggregate_layers
layer_degree_correlation	layer_degree_correlation
layer_similarity	layer_similarity
layer_similarity_matrix	layer_similarity_matrix
layout-circle	layout-circle
layout-groups	layout-groups
layout-oval	layout-oval
layout-registry	layout-registry
layout-spring	layout-spring
layout_circle	layout_circle
layout_gephi_fr	layout_gephi_fr
layout_groups	layout_groups
layout_oval	layout_oval
layout_spring	layout_spring
ldegcor	layer_degree_correlation
list_layouts	list_layouts
list_palettes	list_palettes
list_shapes	list_shapes
list_svg_shapes	list_svg_shapes
list_themes	list_themes
lsim	layer_similarity
lsim_matrix	layer_similarity_matrix
map_edge_colors	map_edge_colors
map_node_colors	map_node_colors
map_qgraph_lty	map_qgraph_lty
map_qgraph_shape	map_qgraph_shape
mcml	mcml
membership.cograph_communities	membership.cograph_communities
methods-plot	methods-plot
methods-print	methods-print
mlna	plot_mlna
modularity.cograph_communities	modularity.cograph_communities
motifs	motifs
motif_census	motif_census
mtna	plot_mtna
network_bridges	network_bridges
network_clique_size	network_clique_size
network_cut_vertices	network_cut_vertices
network_girth	network_girth
network_global_efficiency	network_global_efficiency
network_local_efficiency	network_local_efficiency
network_radius	network_radius
network_rich_club	network_rich_club
network_small_world	network_small_world
network_summary	network_summary
network_vertex_connectivity	network_vertex_connectivity
nodes	nodes
n_communities	n_communities
n_edges	n_edges
n_nodes	n_nodes
offset_point	offset_point
output-save	output-save
overlay_communities	overlay_communities
palettes	palettes
palette_blues	palette_blues
palette_colorblind	palette_colorblind
palette_diverging	palette_diverging
palette_pastel	palette_pastel
palette_rainbow	palette_rainbow
palette_reds	palette_reds
palette_viridis	palette_viridis
parse_input	parse_input
parse_svg	parse_svg
pentagon_vertices	pentagon_vertices
perp_mid	perp_mid
plot-bootstrap	plot-bootstrap
plot-compare	plot-compare
plot-heatmap	plot-heatmap
plot-nestimate	plot-nestimate
plot-permutation	plot-permutation
plot-transitions	plot-transitions
plot.cograph_cluster_significance	plot.cograph_cluster_significance
plot.cograph_communities	plot.cograph_communities
plot.cograph_motifs	plot.cograph_motifs
plot.cograph_motif_analysis	plot.cograph_motif_analysis
plot.cograph_motif_result	motifs
plot.cograph_network	plot.cograph_network
plot.netobject_group	plot_netobject_group
plot.netobject_ml	plot_netobject_ml
plot.tna_disparity	plot.tna_disparity
plot_alluvial	plot_alluvial
plot_bootstrap_forest	plot_bootstrap_forest
plot_bootstrap_forest.boot_glasso	plot_bootstrap_forest
plot_bootstrap_forest.net_bootstrap	plot_bootstrap_forest
plot_bootstrap_forest.net_bootstrap_group	plot_bootstrap_forest
plot_bootstrap_forest.tna_bootstrap	plot_bootstrap_forest
plot_chord	plot_chord
plot_compare	plot_compare
plot_comparison_heatmap	plot_comparison_heatmap
plot_edge_diff_forest	plot_edge_diff_forest
plot_edge_diff_forest.boot_glasso	plot_edge_diff_forest
plot_group_permutation	plot_group_permutation
plot_heatmap	plot_heatmap
plot_htna	plot_htna
plot_mcml	plot_mcml
plot_mixed_network	plot_mixed_network
plot_mlna	plot_mlna
plot_ml_heatmap	plot_ml_heatmap
plot_mtna	plot_mtna
plot_netobject_group	plot_netobject_group
plot_netobject_ml	plot_netobject_ml
plot_permutation	plot_permutation
plot_robustness	plot_robustness
plot_simplicial	plot_simplicial
plot_tna	plot_tna
plot_trajectories	plot_trajectories
plot_transitions	plot_transitions
point_angle	point_angle
point_distance	point_distance
point_on_circle	point_on_circle
print.cograph_communities	print.cograph_communities
print.cograph_network	print.cograph_network
qgraph_arrow_size	qgraph_arrow_size
qgraph_cent2edge	qgraph_cent2edge
qgraph_cent_to_edge_simple	qgraph_cent_to_edge_simple
qgraph_default_esize	qgraph_default_esize
qgraph_default_vsize	qgraph_default_vsize
qgraph_norm_curve	qgraph_norm_curve
qgraph_plot_info	qgraph_plot_info
QGRAPH_SCALE	QGRAPH_SCALE
qgraph_scale_edge_widths	qgraph_scale_edge_widths
qgraph_vsize_to_user	qgraph_vsize_to_user
rectangle_vertices	rectangle_vertices
recycle_to_length	recycle_to_length
register_builtin_layouts	register_builtin_layouts
register_builtin_palettes	register_builtin_palettes
register_builtin_shapes	register_builtin_shapes
register_builtin_themes	register_builtin_themes
register_layout	register_layout
register_shape	register_shape
register_svg_shape	register_svg_shape
register_theme	register_theme
regular_polygon_vertices	regular_polygon_vertices
render-edges	render-edges
render-ggplot	render-ggplot
render-grid	render-grid
render-nodes	render-nodes
render_edges_base	render_edges_base
render_edges_grid	render_edges_grid
render_edges_splot	render_edges_splot
render_edge_labels_grid	render_edge_labels_grid
render_legend_grid	render_legend_grid
render_legend_splot	render_legend_splot
render_nodes_base	render_nodes_base
render_nodes_grid	render_nodes_grid
render_nodes_splot	render_nodes_splot
render_node_labels_grid	render_node_labels_grid
rescale_layout	rescale_layout
resolve_aesthetic	resolve_aesthetic
resolve_centrality_sizes	resolve_centrality_sizes
resolve_donut_params	resolve_donut_params
resolve_edge_colors	resolve_edge_colors
resolve_edge_labels	resolve_edge_labels
resolve_edge_styles	resolve_edge_styles
resolve_edge_widths	resolve_edge_widths
resolve_labels	resolve_labels
resolve_label_sizes	resolve_label_sizes
resolve_loop_rotation	resolve_loop_rotation
resolve_node_colors	resolve_node_colors
resolve_node_sizes	resolve_node_sizes
resolve_shapes	resolve_shapes
resolve_stars	resolve_stars
robustness	robustness
robustness_auc	robustness_auc
robustness_edge_attack	robustness_edge_attack
robustness_summary	robustness_summary
robustness_vertex_attack	robustness_vertex_attack
scale-constants	scale-constants
scale_alpha	scale_alpha
scale_color	scale_color
scale_color_discrete	scale_color_discrete
scale_edge_widths	scale_edge_widths
scale_edge_widths_simple	scale_edge_widths_simple
scale_node_sizes	scale_node_sizes
scale_size	scale_size
scale_width	scale_width
select_bridges	select_bridges
select_component	select_component
select_edges	select_edges
select_edges_between	select_edges_between
select_edges_involving	select_edges_involving
select_neighbors	select_neighbors
select_nodes	select_nodes
select_top	select_top
select_top_edges	select_top_edges
set_edges	set_edges
set_groups	set_groups
set_layout	set_layout
set_nodes	set_nodes
shapes-basic	shapes-basic
shapes-registry	shapes-registry
shapes-special	shapes-special
shapes-svg	shapes-svg
shorten_edge_for_arrow	shorten_edge_for_arrow
simplify	simplify
simplify.cograph_network	simplify
simplify.default	simplify
simplify.igraph	simplify
simplify.matrix	simplify
simplify.tna	simplify
sn_edges	sn_edges
sn_ggplot	sn_ggplot
sn_layout	sn_layout
sn_nodes	sn_nodes
sn_palette	sn_palette
sn_render	soplot
sn_save	sn_save
sn_save_ggplot	sn_save_ggplot
sn_theme	sn_theme
sonplot-qgraph-geometry	sonplot-qgraph-geometry
soplot	soplot
splot	splot
splot-arrows	splot-arrows
splot-edges	splot-edges
splot-geometry	splot-geometry
splot-labels	splot-labels
splot-nodes	splot-nodes
splot-params	splot-params
splot-polygons	splot-polygons
splot.boot_glasso	splot.boot_glasso
splot.group_tna_permutation	plot_group_permutation
splot.netobject	splot.netobject
splot.net_bootstrap	splot.net_bootstrap
splot.net_permutation	splot.net_permutation
splot.tna_bootstrap	splot.tna_bootstrap
splot.tna_disparity	splot.tna_disparity
splot.tna_permutation	plot_permutation
splot.wtna_mixed	splot.wtna_mixed
splot_angle	splot_angle
square_vertices	square_vertices
star_vertices	star_vertices
student_interactions	student_interactions
subgraphs	subgraphs
subset_edges	filter_edges
subset_nodes	filter_nodes
summarize_network	summarize_network
summary.cograph_network	summary.cograph_network
supra	supra_adjacency
supra_adjacency	supra_adjacency
supra_interlayer	supra_interlayer
supra_layer	supra_layer
themes-builtin	themes-builtin
themes-registry	themes-registry
theme_cograph_classic	theme_cograph_classic
theme_cograph_colorblind	theme_cograph_colorblind
theme_cograph_dark	theme_cograph_dark
theme_cograph_gray	theme_cograph_gray
theme_cograph_minimal	theme_cograph_minimal
theme_cograph_nature	theme_cograph_nature
theme_cograph_viridis	theme_cograph_viridis
tna_color_palette	tna_color_palette
to_cograph	as_cograph
to_data_frame	to_data_frame
to_df	to_data_frame
to_igraph	to_igraph
to_matrix	to_matrix
to_network	to_network
tplot	plot_tna
triad_census	triad_census
triangle_vertices	triangle_vertices
unregister_svg_shape	unregister_svg_shape
usr_to_in_x	usr_to_in_x
usr_to_in_y	usr_to_in_y
utils-colors	utils-colors
utils-deprecation	utils-deprecation
utils-geometry	utils-geometry
utils-globals	utils-globals
utils-validation	utils-validation
validate_choice	validate_choice
validate_color	validate_color
validate_length	validate_length
validate_network	validate_network
validate_range	validate_range
verify_igraph	verify_with_igraph
verify_with_igraph	verify_with_igraph
wagg	aggregate_weights
zzz	zzz
