Package: cytometree
Type: Package
Title: Automated Cytometry Gating and Annotation
Version: 2.0.2
Date: 2019-12-04
Author: Chariff Alkhassim, Boris P Hejblum, Anthony Devaux, Van Hung Huynh Tran
Maintainer: Boris P Hejblum <boris.hejblum@u-bordeaux.fr>
LinkingTo: Rcpp, RcppArmadillo
Description: Given the hypothesis of a bi-modal distribution of cells for
    each marker, the algorithm constructs a binary tree, the nodes of which are
    subpopulations of cells. At each node, observed cells and markers are modeled
    by both a family of normal distributions and a family of bi-modal normal mixture
    distributions. Splitting is done according to a normalized difference of AIC
    between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, 
    Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>. 
License: LGPL-3 | file LICENSE
LazyData: true
Depends: R (>= 3.1.0), Rcpp (>= 0.12.11)
Imports: ggplot2, graphics, igraph, mclust, methods, stats, cowplot,
        GoFKernel
RoxygenNote: 7.0.2
BugReports: https://github.com/sistm/Cytometree/issues
Encoding: UTF-8
Suggests: knitr, formatR, rmarkdown, viridis
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2019-12-04 20:27:58 UTC; boris
Repository: CRAN
Date/Publication: 2019-12-04 22:20:19 UTC
Built: R 4.6.0; x86_64-w64-mingw32; 2025-07-24 02:49:30 UTC; windows
Archs: x64
