# Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations

## Documentation for package ‘dgpsi’ version 2.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

alm | Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.bundle | Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.dgp | Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
alm.gp | Locate the next design point(s) for a (D)GP emulator or a bundle of (D)GP emulators using Active Learning MacKay (ALM)
continue | Continue training a DGP emulator
deserialize | Restore the serialized emulator
design | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.bundle | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.dgp | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
design.gp | Sequential design of a (D)GP emulator or a bundle of (D)GP emulators
dgp | Deep Gaussian process emulator construction
draw | Validation and diagnostic plots for a sequential design
draw.bundle | Validation and diagnostic plots for a sequential design
draw.dgp | Validation and diagnostic plots for a sequential design
draw.gp | Validation and diagnostic plots for a sequential design
get_thread_num | Get the number of threads
gp | Gaussian process emulator construction
init_py | 'python' environment initialization
lgp | Linked (D)GP emulator construction
mice | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
mice.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE
nllik | Calculate the predictive negative log-likelihood
pack | Pack GP and DGP emulators into a bundle
plot | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.dgp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.gp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
plot.lgp | Validation plots of a constructed GP, DGP, or linked (D)GP emulator
predict | Prediction from GP, DGP, or linked (D)GP emulators
predict.dgp | Prediction from GP, DGP, or linked (D)GP emulators
predict.gp | Prediction from GP, DGP, or linked (D)GP emulators
predict.lgp | Prediction from GP, DGP, or linked (D)GP emulators
prune | Static pruning of a DGP emulator
read | Load the stored emulator
serialize | Serialize the constructed emulator
set_id | Set Emulator ID
set_imp | Reset number of imputations for a DGP emulator
set_seed | Random seed generator
set_thread_num | Set the number of threads
set_vecchia | Add or remove the Vecchia approximation
summary | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.dgp | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.gp | Summary of a constructed GP, DGP, or linked (D)GP emulator
summary.lgp | Summary of a constructed GP, DGP, or linked (D)GP emulator
trace_plot | Trace plot for DGP hyperparameters
unpack | Unpack a bundle of (D)GP emulators
update | Update a GP or DGP emulator
update.dgp | Update a GP or DGP emulator
update.gp | Update a GP or DGP emulator
validate | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.dgp | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.gp | Validate a constructed GP, DGP, or linked (D)GP emulator
validate.lgp | Validate a constructed GP, DGP, or linked (D)GP emulator
vigf | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.bundle | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.dgp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
vigf.gp | Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using VIGF
window | Trim the sequence of hyperparameter estimates within a DGP emulator
write | Save the constructed emulator