# Model Transport of Environmental DNA in River Networks

## Documentation for package ‘eDITH’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

eDITH-package | Model Transport of Environmental DNA In River Networks
dataC | eDNA concentration data
dataCD | eDNA concentration and direct observation data
dataRead | eDNA read number data
eDITH | Model Transport of Environmental DNA In River Networks
eval_posterior_eDITH | Evaluate posterior predictions from an eDITH run
outSample | Posterior sample from fitted eDITH model
posterior_pred_sim_eDITH | Predictive posterior simulations from an eDITH run
run_eDITH_BT | Run eDITH with BayesianTools
run_eDITH_BT_joint | Run eDITH with BayesianTools based on joint eDNA and direct sampling data
run_eDITH_optim | Optimize eDITH
run_eDITH_optim_joint | Optimize eDITH based on joint eDNA and direct sampling data
run_eDITH_single | Run eDITH for a single parameter set
sampling_strategy_direct | Determine optimal spatial arrangement for direct sampling
sampling_strategy_eDNA | Determine optimal spatial arrangement for eDNA sampling
wigger | River Wigger