# Evolutionary Algorithm

## Documentation for package ‘evola’ version 1.0.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A | Genotypic and Phenotypic data for a CP population
A.mat | Additive relationship matrix
addZeros | Function to add zeros before and after a numeric vector to have the same number of characters.
A_wheat | wheat lines dataset
bestSol | Extract the index of the best solution
drift | Drift of positive allele calculation
DT_cpdata | Genotypic and Phenotypic data for a CP population
DT_envs | Simulated phenotypic records for a set of 100 environments and 200 entries.
DT_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014)
DT_wheat | wheat lines dataset
evola | *EVOL*utionary *A*lgorithm
evolafit | Fits a genetic algorithm for a set of traits and constraints.
evolaPop | Genetic algorithm pop
evolaPop-class | Genetic algorithm pop
GT_wheat | wheat lines dataset
importHaploSparse | Import haplotypes
inbFun | Fitness function from contribution theory using only the group relationship
Jc | Matrix of ones
Jr | Matrix of ones
logspace | Decreasing exponential trend
M | Simulated phenotypic records for a set of 100 environments and 200 entries.
M_technow | Genotypic and Phenotypic data from single cross hybrids (Technow et al.,2014)
nQtl | Matrix of number of activated QTLs
ocsFun | Fitness function from contribution theory
overlay | Overlay Matrix
pareto | plot the change of values across iterations
pmonitor | plot the change of values across iterations
regFun | Fitness function from linear regressions based on mean squared error.
stan | Standardize a vector of values in range 0 to 1
summary.Pop | summary form an evolafit model
update.evolaFitMod | update form an evolafit model
varQ | Extract the variance existing in the genome solutions
W | Simulated phenotypic records for a set of 100 environments and 200 entries.