Package: inDAGO
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Version: 1.0.0
Authors@R: c(
    person("Carmine", "Fruggiero", , "fruggierocarmine3@gmail.com", role = c("aut","cre")),
    person("Gaetano", "Aufiero", , "gaetano.aufiero@gmail.com", role = "aut")
  )
Description: A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
    RNA-seq functionality offering the flexibility to perform either a
    sequential approach (where reads are mapped separately to each genome)
    or a combined approach (where reads are aligned to a single merged
    genome). The user-friendly interface automates the analysis process,
    providing step-by-step guidance, making it easy for users to navigate
    between different analysis steps, and download intermediate results
    and publication-ready plots.
License: GPL (>= 3)
URL: https://github.com/inDAGOverse/inDAGO
BugReports: https://github.com/inDAGOverse/inDAGO/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Imports: bigtabulate, BiocGenerics, Biostrings, bsicons, bslib, callr,
        checkmate, data.table, dplyr, DT, edgeR, fs, ggplot2, ggrepel,
        grDevices, heatmaply, Hmisc, htmltools, HTSFilter, limma,
        magrittr, matrixStats, memuse, methods, paletteer, parallel,
        pheatmap, plotly, R.devices, readr, reshape2, Rfastp, rintrojs,
        Rsamtools, Rsubread, rtracklayer, S4Vectors, seqinr, shiny,
        shinycssloaders, shinyFiles, shinyjs, shinyWidgets, ShortRead,
        spsComps, stats, tibble, tidyr, tools, upsetjs, UpSetR, utils,
        XVector
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-06-30 09:20:24 UTC; gaeta
Author: Carmine Fruggiero [aut, cre],
  Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>
Repository: CRAN
Date/Publication: 2025-07-05 15:00:02 UTC
Built: R 4.6.0; ; 2025-09-04 03:43:07 UTC; windows
